Jatropha Genome Database

JcCA0045271.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045271.10 + phase: 2 /partial
         (205 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m014298 ornithine decarboxylase, putative                       186   9e-48
30170.m014299 ornithine decarboxylase, putative                       180   5e-46
30170.m014293 arginine/diaminopimelate/ornithine decarboxylase, ...    76   1e-14

>30170.m014298 ornithine decarboxylase, putative
          Length = 416

 Score =  186 bits (471), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 96/210 (45%), Positives = 137/210 (65%), Gaps = 9/210 (4%)

Query: 1   FHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDS 60
           FH+GS +++P  Y +AIA+A+ AFDTA +L MP M +LN+GGGF A   FDE    +N +
Sbjct: 207 FHIGSESTNPNAYRTAIASAKAAFDTAGRLGMPPMTLLNVGGGFTAGSFFDEAATVINSA 266

Query: 61  IQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGSFKLAAN 120
           +Q++F+ +   L VI+EPGRYFAET F L  ++IGKR+R +  +YW++DG+ GSF   A 
Sbjct: 267 LQDYFA-EYPQLKVISEPGRYFAETVFTLAASIIGKRVRDDVREYWLNDGVFGSFLCVAY 325

Query: 121 --DPASLMYKVLLQNE-----DGAGPITSSTIFGPTCDSLDVVISGCELSELQVNDLIVF 173
              P + +   L  N      +GA P   ST+FGPTCDS+D ++   +L EL+ ND +VF
Sbjct: 326 GITPPACLPLALSSNRTNPTCEGA-PTHMSTLFGPTCDSVDKIVEEHQLPELETNDWLVF 384

Query: 174 YNMGAYTTSFASKFNGFNRFDLPTYLAFTN 203
            NMGAY+   A+ FNGF+   + TYL + N
Sbjct: 385 PNMGAYSKVCATNFNGFSPDVVFTYLVYGN 414


>30170.m014299 ornithine decarboxylase, putative
          Length = 416

 Score =  180 bits (456), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 94/209 (44%), Positives = 131/209 (62%), Gaps = 7/209 (3%)

Query: 1   FHVGSIASDPQVYHSAIATARFAFDTAIKLEMPAMRILNIGGGFRANPLFDEIVKTVNDS 60
           FH+GS + +P  Y  AI  A+  FDTA +L MP MR+LNIGGGF A   FDE    +  +
Sbjct: 207 FHIGSESRNPHAYRGAIGAAKHVFDTASRLGMPPMRVLNIGGGFIAGSNFDEAATVIKAA 266

Query: 61  IQEFFSNDMTSLTVIAEPGRYFAETPFILVTNVIGKRMRGEEIDYWIDDGIHGSFKL--- 117
           +Q++F  D   + +I+EPGRYFAET F+L T++ GKR+RG  I+YWI+DG+ GSF     
Sbjct: 267 LQDYF-GDNPGIEIISEPGRYFAETVFMLATSITGKRVRGGIIEYWINDGVFGSFSCVIF 325

Query: 118 AANDPASLMYKVL--LQNEDGAG-PITSSTIFGPTCDSLDVVISGCELSELQVNDLIVFY 174
             + PA +         N    G P   ST++GPTCD++D V    EL EL++ND +VF 
Sbjct: 326 GVSPPACVPLACTSNRANPKCKGEPTYKSTVYGPTCDAVDKVFVDQELPELEINDWLVFP 385

Query: 175 NMGAYTTSFASKFNGFNRFDLPTYLAFTN 203
            MGAYTT+ A+ F GF+   + T+L ++N
Sbjct: 386 YMGAYTTANATIFQGFSSEAIFTHLVYSN 414


>30170.m014293 arginine/diaminopimelate/ornithine decarboxylase,
           putative
          Length = 97

 Score = 75.9 bits (185), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 54/89 (60%), Gaps = 6/89 (6%)

Query: 121 DPASLMYKVLLQNEDGAGPIT------SSTIFGPTCDSLDVVISGCELSELQVNDLIVFY 174
           D A++    L  + + A P        SST+FGPTCD+LD V+ G  L EL +ND +VF 
Sbjct: 7   DHATITCTPLACSSNRANPTCKGLRTHSSTVFGPTCDALDTVLKGHPLPELHINDWLVFP 66

Query: 175 NMGAYTTSFASKFNGFNRFDLPTYLAFTN 203
           NMGAYT +  S FNGF+   + TYL ++N
Sbjct: 67  NMGAYTAAAGSNFNGFDTKAILTYLVYSN 95