Jatropha Genome Database

JcCA0045131.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0045131.20 + phase: 0 /partial
         (111 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29794.m003380 conserved hypothetical protein                           78   7e-16
30170.m014188 conserved hypothetical protein                           67   2e-12

>29794.m003380 conserved hypothetical protein
          Length = 213

 Score = 78.2 bits (191), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 36/36 (100%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           +SLPGQ+YDPPEEREPLRIFYESLSKQIPSSEMAEF
Sbjct: 97  FSLPGQRYDPPEEREPLRIFYESLSKQIPSSEMAEF 132


>30170.m014188 conserved hypothetical protein
          Length = 273

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 76  YSLPGQKYDPPEEREPLRIFYESLSKQIPSSEMAEF 111
           Y LPGQK DPPEER+PLRIFYE+L KQ+P+SEMA+ 
Sbjct: 134 YDLPGQKRDPPEERDPLRIFYETLYKQLPNSEMAQI 169