Jatropha Genome Database

JcCA0043881.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0043881.10 + phase: 0 
         (314 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

27798.m000585 α-carboxyl-tansferase (α-CT) subunit of ...   573   e-164
30174.m008999 acetyl-coenzyme A carboxylase carboxyl transferase...   449   e-127

>27798.m000585 α-carboxyl-tansferase (α-CT) subunit of
           Het-ACCase
          Length = 766

 Score =  573 bits (1476), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 275/316 (87%), Positives = 283/316 (89%), Gaps = 3/316 (0%)

Query: 1   MASISHSPSAFR--GTSASDLLRSSSNGVSGIPLRTLGRARFSSK-TKDFAVIAKIRKVK 57
           MASISH P +F   G SASDLLRSSSNGVSGIPLR L RARFSSK T DF V+AKIRK K
Sbjct: 1   MASISHCPVSFTATGASASDLLRSSSNGVSGIPLRRLDRARFSSKKTGDFGVVAKIRKGK 60

Query: 58  KQEYPWPDNPDPNVAGGVLSHLSPFKPLKEKPKPVTLDFEKPLIGLEKKIIDVRKMANET 117
           KQEYPWPDNPDPNV GG+LSHLSPFKPLKEKPKPVTLDFEKPL+ LEKKIIDVRKMA ET
Sbjct: 61  KQEYPWPDNPDPNVPGGILSHLSPFKPLKEKPKPVTLDFEKPLVDLEKKIIDVRKMAQET 120

Query: 118 GLDFTDQIISLENKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDKFVELHGD 177
           GLDF+DQIISLE+KYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDKFVELHGD
Sbjct: 121 GLDFSDQIISLESKYQQALKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDKFVELHGD 180

Query: 178 RAGYDDPAIVTGIGTIDGRRYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADH 237
           RAGYDDPAIVTGIGTIDG+RYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADH
Sbjct: 181 RAGYDDPAIVTGIGTIDGKRYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADH 240

Query: 238 HGFPIVTFIDTPGAFADLKSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXX 297
           HGFPIVTFIDTPGA+ADLKSEELGQGEAIAHNLRTMFGLKVP                  
Sbjct: 241 HGFPIVTFIDTPGAYADLKSEELGQGEAIAHNLRTMFGLKVPIVSIVIGEGGSGGALAIG 300

Query: 298 CANKLLMLENAVFYVA 313
           CANKLLMLENAVFYVA
Sbjct: 301 CANKLLMLENAVFYVA 316


>30174.m008999 acetyl-coenzyme A carboxylase carboxyl transferase
           alpha, putative
          Length = 722

 Score =  449 bits (1155), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 215/298 (72%), Positives = 241/298 (80%), Gaps = 8/298 (2%)

Query: 16  ASDLLRSSSNGVSGIPLRTLGRARFSSKTKDFAVIAKIRKVKKQEYPWPDNPDPNVAGGV 75
           AS LLRSS   V+G     +GR           VIAK++K KK +YPWPD+ DPN+  G 
Sbjct: 29  ASGLLRSSLRRVNGYKRTGIGRG--------LRVIAKVKKWKKHDYPWPDDIDPNIDTGH 80

Query: 76  LSHLSPFKPLKEKPKPVTLDFEKPLIGLEKKIIDVRKMANETGLDFTDQIISLENKYQQA 135
           LS+LS FKPL EKPKPVTL FEKPL+ LEK+II+VR+MA+ETGLDF+DQI +LE+KYQQA
Sbjct: 81  LSYLSHFKPLAEKPKPVTLPFEKPLMDLEKRIIEVRRMADETGLDFSDQIGALESKYQQA 140

Query: 136 LKDLYTHLTPIQRVNIARHPNRPTFLDHVFSITDKFVELHGDRAGYDDPAIVTGIGTIDG 195
           LKDLYTHLTPIQR+ IARHPNRPT LDH+F+IT+K+VELHGDRAGYDDPAIVTGIGTIDG
Sbjct: 141 LKDLYTHLTPIQRLTIARHPNRPTVLDHIFNITEKWVELHGDRAGYDDPAIVTGIGTIDG 200

Query: 196 RRYMFMGHQKGRNTKENIMRNFGMPTPHGYRKALRMMYYADHHGFPIVTFIDTPGAFADL 255
           + YMF+GHQKGRNTKENI RNF MPTPHGYRKALRMM YADHHGFPI+TF+DTPGAFADL
Sbjct: 201 KSYMFIGHQKGRNTKENIARNFAMPTPHGYRKALRMMKYADHHGFPIITFVDTPGAFADL 260

Query: 256 KSEELGQGEAIAHNLRTMFGLKVPXXXXXXXXXXXXXXXXXXCANKLLMLENAVFYVA 313
           KSEELGQGEAIAHNLRTMFGLKVP                  CANKL MLEN+ FYVA
Sbjct: 261 KSEELGQGEAIAHNLRTMFGLKVPIITVVTGEGGSGGALAIACANKLFMLENSAFYVA 318