Jatropha Genome Database

JcCA0040611.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040611.10 - phase: 2 /TE/partial
         (175 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29766.m000122 conserved hypothetical protein                           79   1e-15
29669.m000842 conserved hypothetical protein                           69   1e-12
28331.m000097 conserved hypothetical protein                           65   2e-11
29646.m001054 hypothetical protein                                     62   1e-10
29506.m000168 conserved hypothetical protein                           59   1e-09
29823.m000212 hypothetical protein                                     56   8e-09
29788.m000331 conserved hypothetical protein                           54   3e-08
29635.m000451 hypothetical protein                                     50   5e-07

>29766.m000122 conserved hypothetical protein
          Length = 206

 Score = 78.6 bits (192), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 49/83 (59%), Gaps = 24/83 (28%)

Query: 92  MVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSV 151
           MV+SW+ RSL PSIAQSILWID A ++WKDL +RF+Q                       
Sbjct: 1   MVLSWILRSLSPSIAQSILWIDNAMDVWKDLYNRFSQ----------------------- 37

Query: 152 TDYFTQLKIL*DELMNFRPIPSC 174
            DYFTQLKIL DE +N R +P C
Sbjct: 38  -DYFTQLKILWDEYLNLRMVPVC 59


>29669.m000842 conserved hypothetical protein
          Length = 207

 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 12/131 (9%)

Query: 35  SALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPS-----QRR 89
           + ++L S    G NY  W RA+K+AL  KNKL FV+GS   PS      HP       R 
Sbjct: 38  TGMILFSKTLNGDNYPGWKRAIKLALNLKNKLRFVEGSCEPPSKEK---HPDSYGSWSRC 94

Query: 90  NTMVISWLTRSL*PSIAQSILWIDKATNIWKDLQDRFAQGDVIRIFDLQEEIYVFRQGEL 149
           N MV SW+  +L P IA ++++   A  +W+ L D   +  ++    L   +   RQ   
Sbjct: 95  NDMVHSWIINTLDPKIADNVIYYATAYEVWEVLCDDSHKSQIL----LHSPLPTVRQSYA 150

Query: 150 SVTDYFTQLKI 160
           S+T    Q++I
Sbjct: 151 SITQAEKQIQI 161


>28331.m000097 conserved hypothetical protein
          Length = 125

 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/83 (34%), Positives = 51/83 (61%)

Query: 38  VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
           V+++P  T  NY SW  +  +A++ +NK  F++GS   P I D ++   +R N ++I+WL
Sbjct: 37  VILTPELTAINYTSWRSSFLLAISIRNKQDFLNGSTIKPPIQDPIFQSWKRCNNLLIAWL 96

Query: 98  TRSL*PSIAQSILWIDKATNIWK 120
             S+ P IA ++ ++D A  IW+
Sbjct: 97  LCSISPMIAPTVFYMDDAKQIWE 119


>29646.m001054 hypothetical protein
          Length = 98

 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 50/85 (58%)

Query: 56  MKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWLTRSL*PSIAQSILWIDKA 115
           M++ L +KNK GFVDGS+  P      +H  ++   MV +W+  SL   I +S+ +++  
Sbjct: 1   MEITLYAKNKGGFVDGSLPLPDPNSQDFHRWKKNYAMVKAWIGNSLAKEIHESVAYVETT 60

Query: 116 TNIWKDLQDRFAQGDVIRIFDLQEE 140
             IW +L +R+ Q +  RI+ +++E
Sbjct: 61  REIWLELCERYGQSNTPRIYKIKKE 85


>29506.m000168 conserved hypothetical protein
          Length = 128

 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 52/88 (59%)

Query: 36  ALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVIS 95
            + L+S     +NY  W+R++K+AL +K+KLG+++G I  P+ T   Y   ++ + +V +
Sbjct: 41  GMPLISTLMNENNYIPWSRSVKLALGAKDKLGYINGEIAKPASTAKKYKMWKKTDCLVAA 100

Query: 96  WLTRSL*PSIAQSILWIDKATNIWKDLQ 123
           W+  S+    A+  ++     ++W+++Q
Sbjct: 101 WILSSILKEHAEGFIYCSSTKDLWEEIQ 128


>29823.m000212 hypothetical protein
          Length = 215

 Score = 56.2 bits (134), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 67/121 (55%), Gaps = 16/121 (13%)

Query: 38  VLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVISWL 97
           V+VSP  T  N+ SW R+  + ++ +NK      SI+ P+  D +Y P  R N ++++WL
Sbjct: 39  VIVSPELTSMNFASWKRSFLLVVSIRNK----QVSISKPAPKDPLYLPWIRCNNLMVAWL 94

Query: 98  TRSL*PSIAQSILWIDKA--TNIWKDLQD-----RFAQG----DVIRIF-DLQEEIYVFR 145
            RS+   I+ ++ ++++A    IW++L++       A G       ++F D+Q++ Y F 
Sbjct: 95  LRSISAPISSTVFYMEEANLNGIWEELRNFRPHPHCACGKCNPSCFQVFIDIQQKDYNFN 154

Query: 146 Q 146
           +
Sbjct: 155 E 155


>29788.m000331 conserved hypothetical protein
          Length = 103

 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 48/85 (56%)

Query: 35  SALVLVSPARTGSNYHSWARAMKMALASKNKLGFVDGSITSPSITDSMYHPSQRRNTMVI 94
           ++L L S    G NY SW+RA  +AL  ++KL +V+G   +P  +D  +   Q  +  V+
Sbjct: 17  TSLRLTSVLLNGFNYVSWSRAASLALLGRSKLSYVNGKKEAPKPSDPSFDAWQSNDQPVM 76

Query: 95  SWLTRSL*PSIAQSILWIDKATNIW 119
           SW+  S+ P IA++ ++ D   + W
Sbjct: 77  SWILNSMEPKIAETFVFADSDYDPW 101


>29635.m000451 hypothetical protein
          Length = 130

 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 31/57 (54%)

Query: 118 IWKDLQDRFAQGDVIRIFDLQEEIYVFRQGELSVTDYFTQLKIL*DELMNFRPIPSC 174
           +W  L  RF+Q D  RI+ LQ  +    QG  SV  YF +L  +  EL NF P+P C
Sbjct: 1   MWSTLSRRFSQPDDSRIYQLQHMLCSVSQGTNSVDAYFIELNSIWKELHNFIPLPHC 57