Jatropha Genome Database

JcCA0040601.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0040601.10 - phase: 2 /pseudo/partial
         (256 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30129.m000356 WD-repeat protein, putative                             469   e-133
29729.m002396 WD-repeat protein, putative                             334   3e-92
30128.m008811 WD-repeat protein, putative                             232   1e-61
28612.m000123 WD-repeat protein, putative                             130   5e-31
29703.m001515 breast carcinoma amplified sequence, putative            50   1e-06
28166.m001060 breast carcinoma amplified sequence, putative            49   2e-06
30128.m008700 breast carcinoma amplified sequence, putative            47   7e-06

>30129.m000356 WD-repeat protein, putative
          Length = 447

 Score =  469 bits (1207), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 231/256 (90%), Positives = 238/256 (92%), Gaps = 7/256 (2%)

Query: 7   VVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV 66
           VVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV
Sbjct: 142 VVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDRIIVV 201

Query: 67  LEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYASKRT 126
           LEQKIFVYNFADLKLLHQIETIANPKGLCAVS GAGSLV+VCPGLQKGQVRVEHYASKRT
Sbjct: 202 LEQKIFVYNFADLKLLHQIETIANPKGLCAVSHGAGSLVLVCPGLQKGQVRVEHYASKRT 261

Query: 127 KFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIYSLAF 186
           KFIMAHDSRIACFALTQDGQLLATASTKGTLVR+FNTADG+LLQEVRRGADRAEIYS+AF
Sbjct: 262 KFIMAHDSRIACFALTQDGQLLATASTKGTLVRVFNTADGSLLQEVRRGADRAEIYSVAF 321

Query: 187 SSTAQWLAVSSDKGTVHVFSLKINPGSPGTDKSGNTTDPNNAVTSPTSSLSFFKGVLP*V 246
           SSTAQWLAVSSDKGTVHVFSLK  PGS GTD+S NTTDPN  V+SPTSSLSFFKGVLP  
Sbjct: 322 SSTAQWLAVSSDKGTVHVFSLKTTPGSLGTDRSRNTTDPNVGVSSPTSSLSFFKGVLPKY 381

Query: 247 F-------QLRVVSGS 255
           F       Q R+V GS
Sbjct: 382 FSSEWSVAQFRLVEGS 397


>29729.m002396 WD-repeat protein, putative
          Length = 598

 Score =  334 bits (856), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 163/262 (62%), Positives = 198/262 (75%), Gaps = 17/262 (6%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRRDR 62
           GG  +VEMLFRCNILALVG  S+ Q+PPNKV+IWDDHQSRCIGE SFRSEVR+VKLRRDR
Sbjct: 272 GGFKIVEMLFRCNILALVGRDSNSQHPPNKVLIWDDHQSRCIGEFSFRSEVRAVKLRRDR 331

Query: 63  IIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVEHYA 122
           I+VVLE KI+VY+F DLKLLHQIET+ANP+GLC +S  + + V+ CPGL +GQVR+EH+ 
Sbjct: 332 IVVVLEHKIYVYSFMDLKLLHQIETLANPRGLCCLSHHSNTSVLACPGLHRGQVRIEHFG 391

Query: 123 SKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRAEIY 182
               K I AHDS +AC  LT DG LLATAS +GTL+RIFNT DGT LQEVRRG DRA+IY
Sbjct: 392 LNVMKLINAHDSHLACITLTMDGLLLATASIRGTLIRIFNTMDGTRLQEVRRGVDRADIY 451

Query: 183 SLAFSSTAQWLAVSSDKGTVHVFSLKI-----NPGSPGTDKSG------NTTDPNNAVTS 231
            +A S+  QWLAVSSDKGTVH+FSL++     +P S  +   G      N+++  +A+ S
Sbjct: 452 GIALSTNVQWLAVSSDKGTVHIFSLRVRVAGEDPSSQSSPIQGPALQNQNSSNFLDALIS 511

Query: 232 PT------SSLSFFKGVLP*VF 247
           P+      SSLSF +GVLP  F
Sbjct: 512 PSTSANPGSSLSFMRGVLPKYF 533


>30128.m008811 WD-repeat protein, putative
          Length = 330

 Score =  232 bits (591), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 130/267 (48%), Positives = 158/267 (59%), Gaps = 61/267 (22%)

Query: 3   GGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWD---DHQSRCIGELSFRSEVRSVKLR 59
           G +G+V MLFR N   LVG G++P+  P  V IW+   D+ SRC+GEL  RSE  S    
Sbjct: 53  GRVGIVAMLFRSNHFCLVGSGTEPKLSPKMVKIWETRRDYSSRCLGELWLRSETSS---- 108

Query: 60  RDRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPGLQKGQVRVE 119
                                                       +V+VCPGLQ GQ+RVE
Sbjct: 109 -------------------------------------------PMVLVCPGLQNGQIRVE 125

Query: 120 HYASKRTKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADRA 179
            + SKRTKFI AH+S IAC  LTQDG+ LATASTKGTL+R+FNT DG+LLQEVRRGA++A
Sbjct: 126 TFGSKRTKFITAHESCIACMTLTQDGRFLATASTKGTLIRVFNTLDGSLLQEVRRGAEKA 185

Query: 180 EIYSLAFSSTAQWLAVSSDKGTVHVFSLKINPG----SPGTDKSGNTTDPNNAVTSPTSS 235
           EIY+LAFSS AQWLAVSSDKGTVHVF +K+  G    + G D+S   ++PN +  S  SS
Sbjct: 186 EIYNLAFSSNAQWLAVSSDKGTVHVFGIKVVSGLSAPTSGNDRSHVASEPNRSNGSAISS 245

Query: 236 LSFFKGVLP*VF-------QLRVVSGS 255
            SF KGVLP  F       Q R+  GS
Sbjct: 246 FSFLKGVLPKYFSSERSVAQFRLPQGS 272


>28612.m000123 WD-repeat protein, putative
          Length = 349

 Score =  130 bits (328), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 74/212 (34%), Positives = 119/212 (56%), Gaps = 5/212 (2%)

Query: 1   GGGGIGVVEMLFRCNILALVGGGSDPQYPPNKVMIWDDHQSRCIGELSFRSEVRSVKLRR 60
           G G   +VEML+  ++LA+VG G  P   P ++ +++      + EL+F + + +V+L R
Sbjct: 45  GVGAFIIVEMLYSSSLLAIVGAGEQPSLSPRRLCLFNTSTGTALRELNFLTSILAVRLNR 104

Query: 61  DRIIVVLEQKIFVYNFADLKLLHQIETIANPKGLCAVSQGAGSLVMVCPG-LQKGQVRVE 119
            R++V+L++K F+Y+   L +L  I+T+ N KGLCA S       +  P    KG V V 
Sbjct: 105 KRLVVLLQEKTFIYDSNTLAILDTIDTVPNVKGLCAFSPSLDGCFLALPASTTKGSVLVY 164

Query: 120 HYASKRTKF-IMAHDSRIACFALTQDGQLLATASTKGTLVRIFNTADGTLLQEVRRGADR 178
           +    ++   I AH + +A  AL+ +G  +ATAS +GT++R+    + T     RRG   
Sbjct: 165 NVMELQSHCEIDAHRAPLAAVALSSNGMYIATASEQGTIIRVHLVQEATKSYSFRRGTYP 224

Query: 179 AEIYSLAFSSTAQW---LAVSSDKGTVHVFSL 207
           + I+SL+F  + Q    L  SS  G+VHVFSL
Sbjct: 225 STIFSLSFGPSKQLPDILVASSSSGSVHVFSL 256


>29703.m001515 breast carcinoma amplified sequence, putative
          Length = 1016

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/94 (32%), Positives = 41/94 (43%), Gaps = 17/94 (18%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFN-----------------TADGTLLQEVR 173
           AH S I+       G LL TAS  G  + IF                  ++    L ++ 
Sbjct: 373 AHTSPISALCFDPSGTLLVTASIYGNNINIFRIMPSCSRGGLGVQSYDWSSSHVHLYKLH 432

Query: 174 RGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSL 207
           RG   A I  + FS  +QW+A+ S KGT HVF L
Sbjct: 433 RGMTSAMIQDICFSHYSQWIAIVSSKGTCHVFVL 466


>28166.m001060 breast carcinoma amplified sequence, putative
          Length = 891

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 17/99 (17%)

Query: 131 AHDSRIACFALTQDGQLLATASTKGTLVRIFNTADG--------------TLLQEVRRGA 176
           AH S I+       G LL TAS  G  + +F    G              T L  ++RG 
Sbjct: 380 AHRSPISALCFDPSGTLLVTASVHGHNINVFKIMPGIQGSSSAGDAGASYTHLYRLQRGF 439

Query: 177 DRAEIYSLAFSSTAQWLAVSSDKGTVHVFSLKINP-GSP 214
             A I  ++FS  + W+ +SS +GT H+F+  INP G P
Sbjct: 440 TNAVIQDISFSDDSNWIMISSSRGTNHLFA--INPFGGP 476


>30128.m008700 breast carcinoma amplified sequence, putative
          Length = 991

 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 52/113 (46%), Gaps = 20/113 (17%)

Query: 114 GQVRVEHYASKR--TKFIMAHDSRIACFALTQDGQLLATASTKGTLVRIF-------NTA 164
           G V V+ + S+   ++F  AH S I+       G LL TAS  G  + IF        + 
Sbjct: 359 GMVVVKDFVSRAVVSQF-RAHTSPISALCFDPSGTLLVTASIHGNNINIFRIMPSSSQSG 417

Query: 165 DGT----------LLQEVRRGADRAEIYSLAFSSTAQWLAVSSDKGTVHVFSL 207
            GT           L ++ RG   A I  + FS  +QW+A+ S +GT H+F L
Sbjct: 418 SGTKSYDWSSSHVHLYKLHRGITSAVIQDICFSHYSQWIAIVSSRGTCHIFVL 470