Jatropha Genome Database

JcCA0038081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0038081.10 - phase: 1 /pseudo/partial
         (198 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29929.m004627 conserved hypothetical protein                          219   8e-58
30147.m014478 Squamosa promoter-binding protein, putative              47   4e-06

>29929.m004627 conserved hypothetical protein
          Length = 404

 Score =  219 bits (557), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 125/200 (62%), Positives = 140/200 (70%), Gaps = 5/200 (2%)

Query: 1   LQFGGSQIFFNXSSELCMDWSCQTXEXSDALHXSILAKLQ--QRKNLFPGSLSQGYRSGK 58
           LQFGGSQIF   ++     W+      +D +  +  + L     KNLFPGS+S  YR GK
Sbjct: 208 LQFGGSQIFS--TTGASSGWAGAVKPENDPMLYTNQSSLNFSSGKNLFPGSMSHSYRGGK 265

Query: 59  QFPFLQCTSSSAVPRESVCQTIXXXXXXXXXXXXXQKMFSDGANRVIDSNRALSLLSSPS 118
           QFPF  CTSS+ +P ESVCQTI             QKMFSDG N+VIDSN ALSLLSSP 
Sbjct: 266 QFPFSHCTSST-LPGESVCQTILDVRSTLGSSSGNQKMFSDGVNQVIDSNGALSLLSSPQ 324

Query: 119 AQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMGSGPVESVLVSDGSSNANLHGQDMFQ 178
           A+TREIGLSHMVQPDLNPPA+SL PSLNF+ LGM  GPVESVLVSDGS N NLH QDMFQ
Sbjct: 325 AETREIGLSHMVQPDLNPPAQSLIPSLNFSNLGMEGGPVESVLVSDGSHNGNLHSQDMFQ 384

Query: 179 IVPDGSSANGSLQTLSFSWE 198
             PD SSA+GS Q LSFSWE
Sbjct: 385 TGPDESSASGSHQRLSFSWE 404


>30147.m014478 Squamosa promoter-binding protein, putative
          Length = 382

 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 52/163 (31%), Positives = 70/163 (42%), Gaps = 48/163 (29%)

Query: 54  YRSGKQFPFLQC----------TSSSAVP---RESVCQT-IXXXXXXXXXXXXXQKMFSD 99
           Y+ GKQ PFLQ           T+S   P     S+CQ  +               MF D
Sbjct: 250 YKGGKQLPFLQVDNNHSPLNHQTASPPPPLSHAASICQPLLRSITMDESSVISSYSMFCD 309

Query: 100 G----ANRVIDSNRALSLLSSPSAQTREIGLSHMVQPDLNPPARSLNPSLNFNALGMGSG 155
                  +V DS+ ALSLLSS  AQ   I  +HM+QP+  P             L   + 
Sbjct: 310 KLAPTTTQVRDSDCALSLLSSAKAQ---ISGNHMLQPNSVP-------------LAHSAE 353

Query: 156 PVESVLVSDGSSNANLHGQDMFQIVPDGSSANGSLQTLSFSWE 198
           P++SVLVS+        G+D +      SS + + QTL F+WE
Sbjct: 354 PMDSVLVSN--------GRDAW------SSTDNAPQTLPFNWE 382