Jatropha Genome Database

JcCA0036251.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0036251.20 - phase: 2 /TE/pseudo/partial
         (1336 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

50372.m000011 conserved hypothetical protein                           71   4e-12
27894.m000809 conserved hypothetical protein                           64   3e-10

>50372.m000011 conserved hypothetical protein
          Length = 123

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 45/129 (34%), Positives = 62/129 (48%), Gaps = 32/129 (24%)

Query: 750 VLDILANYALLLGRPWLHPLGAIPSTLHRKVKIPWGTDVVTV---------------NAQ 794
           VLDI A++ LLLGRPW+H L A+PSTLH+KVK   G  V+++                 Q
Sbjct: 1   VLDIPASFNLLLGRPWIHALEAVPSTLHQKVKFIQGNRVISIFGDPEEPVLDPIQVLEIQ 60

Query: 795 EDLNVATVEGLELAVPLSGFQVAVIDTPTTESKSAVNRMSPFSRKMMKRMQWQYGRGLGR 854
            D N+   E ++  +PL  F   V                 F  +M + M++  G GLGR
Sbjct: 61  HDENLELAETVKEYLPLPNFSDNV-----------------FVGEMFRSMRYLPGSGLGR 103

Query: 855 ELQGRFEPL 863
             QG  EP+
Sbjct: 104 HHQGIVEPI 112


>27894.m000809 conserved hypothetical protein
          Length = 188

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 76/143 (53%), Gaps = 7/143 (4%)

Query: 680 GRDTRNVMVDNGSALCVCSLKMLSKFKIEESELEPSNMVVKAYDNTMRNAKGTFKAKIST 739
           G  +  VMVD+ S + +C L+ L K+ +E+++LEP++ V++A D + R A  TFKA +  
Sbjct: 24  GIKSSCVMVDDRSRINICPLRFLDKYGLEKTDLEPTSTVIRACDESKRQACRTFKALVKL 83

Query: 740 GTVESWVDVIVLDILANYALLLGRPWLHPLGAIPSTLHRKVKIPWGTDVVTVNAQEDLNV 799
             +ES  +++VLDIL ++A      W       P     + + P    V      + L V
Sbjct: 84  RPIESVTELMVLDILISFAFF----WAGLAILQPEEGKDEKEEPEEVAVNLHGKSQSLTV 139

Query: 800 ATVEGLELA---VPLSGFQVAVI 819
           A V+   ++   +PL+ F++ V+
Sbjct: 140 ALVDHGNISRWVLPLAAFELHVV 162