Jatropha Genome Database

JcCA0032471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0032471.10 - phase: 1 /partial
         (397 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30170.m013868 DNA binding protein, putative                           453   e-128
29801.m003176 DNA binding protein, putative                           305   3e-83
30226.m002055 DNA binding protein, putative                           125   5e-29
29625.m000702 DNA binding protein, putative                           118   6e-27
30055.m001548 conserved hypothetical protein                          111   5e-25
30089.m001012 DNA binding protein, putative                            84   1e-16
29908.m005963 DNA binding protein, putative                            63   3e-10

>30170.m013868 DNA binding protein, putative
          Length = 422

 Score =  453 bits (1166), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 269/367 (73%), Positives = 284/367 (77%), Gaps = 12/367 (3%)

Query: 14  MGTNLNFKNF-TNDPVSDTGGGSRLPGNFPLARQTSIYSLTFDELQSTMGGIGKDFGSMN 72
           MGTNLNFKNF TNDP SD G G+R P N PL RQTSIYSLTFDE QS+MGGIGKDFGSMN
Sbjct: 1   MGTNLNFKNFNTNDPSSD-GSGNRPPVNLPLTRQTSIYSLTFDEFQSSMGGIGKDFGSMN 59

Query: 73  MDELLKNIWTAEETQNMVAASTGPQ--ESLQRQGSLTLPRTLSQKTVDEVWKDISKEYVN 130
           MDELLKNIWTAEET NMVA+ +G Q  E LQRQGSLTLPRTLSQKTVDEVWKDISKEY N
Sbjct: 60  MDELLKNIWTAEETHNMVASCSGTQGQEGLQRQGSLTLPRTLSQKTVDEVWKDISKEYGN 119

Query: 131 XXXXXXXVANVPQRQQTLGEMTLEEFLVRAGVVREDAQIAGKINANGGFYGDLARSGNNS 190
                  V N+PQRQQTLGEMTLEEFLVRAGVVREDAQ+A K+N NGGF+GD +RSGNN+
Sbjct: 120 GNANGGVVTNLPQRQQTLGEMTLEEFLVRAGVVREDAQLAAKVNTNGGFFGDFSRSGNNA 179

Query: 191 GFGLGFQQNRVLAL-------NSNNTNQISMHSSNLPLNVNGVRSNXXX-XXXXXXXXXX 242
             G+GFQQNRVL L       N++NTNQIS+ SSNLPLNVNGVRSN              
Sbjct: 180 SLGIGFQQNRVLGLNINNGNNNNSNTNQISLQSSNLPLNVNGVRSNQANIQQQQQQQRQQ 239

Query: 243 XXXXIFPKQPTLGYVTQMPLQTSPGIRSGIMGIGDXXXXXXXXXXXXXXXXXXXXXXTGS 302
               IFPKQP LGYVTQ+PLQ SPGIR GIMGIGD                      TGS
Sbjct: 240 QQQQIFPKQPNLGYVTQVPLQNSPGIRGGIMGIGDQGINGGLMQGGGMGMIGLGGVATGS 299

Query: 303 PANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRATGAVEKVVERRQRRMIKNRESAAR 362
           PANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRA GAVEKVVERRQRRMIKNRESAAR
Sbjct: 300 PANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRAGGAVEKVVERRQRRMIKNRESAAR 359

Query: 363 SRARKQV 369
           SRARKQ 
Sbjct: 360 SRARKQA 366


>29801.m003176 DNA binding protein, putative
          Length = 433

 Score =  305 bits (780), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 193/386 (50%), Positives = 233/386 (60%), Gaps = 40/386 (10%)

Query: 14  MGTNLNFKNFTNDPVSDTGGGSRLPGNFPLARQTSIYSLTFDELQSTMGG-IGKDFGSMN 72
           MG++LNF+NF N    + G G++  G  PLARQ SIYSLTFDE Q+T GG +GKD GSMN
Sbjct: 1   MGSHLNFRNFGNASYGE-GSGAKPSGISPLARQGSIYSLTFDEFQNTWGGGLGKDLGSMN 59

Query: 73  MDELLKNIWTAEETQNMVAASTG-----PQESLQRQGSLTLPRTLSQKTVDEVWKDISKE 127
           MDELLKNIWTAEETQ M  +  G     P  +LQRQGSLTLPRTLSQKTVDEVWKD+ KE
Sbjct: 60  MDELLKNIWTAEETQAMTNSVVGVDGSAPGGNLQRQGSLTLPRTLSQKTVDEVWKDLVKE 119

Query: 128 YVNXXXXXXXVANVPQRQQTLGEMTLEEFLVRAGVVREDAQIAGKINANGGFYGDLAR-- 185
                      AN+PQRQQTLGEMTLEEFL +AGVVRED Q+ G+ N NGGF+ +L+R  
Sbjct: 120 SSGVKDRSNVGANLPQRQQTLGEMTLEEFLAKAGVVREDTQLIGRPN-NGGFFDELSRLK 178

Query: 186 --SGNNSGFGLGFQQ-NRVLALNSNNTNQISMHSSNL----PLNVNGVRSN----XXXXX 234
             + NNSG  L FQQ NR  AL     +Q+   ++NL    PL+  G+RS+         
Sbjct: 179 NANNNNSGLPLEFQQPNRNNALMG---SQLVETNNNLVAAQPLSAGGIRSSQPLPQQHQM 235

Query: 235 XXXXXXXXXXXXIFPKQPTLGYVTQMPLQ-------TSPGIRSGIMGIGDXXXX----XX 283
                       +FPK   + + +  P+Q        SPG R   +GI D          
Sbjct: 236 HLNQPQPQQQQALFPKSANVAFAS--PVQLVNNAQLASPGARGSAVGIADPSLNNNLVHG 293

Query: 284 XXXXXXXXXXXXXXXXTGSPANQLSSDGITKSNGDTSSVSPVPYVFNGGLRGRRATGAVE 343
                           TGSPANQ+S D + KS  DT  +SPVP +F    RGR+A+ A+E
Sbjct: 294 GGIGIVGLGTRDVKVATGSPANQISPDMMAKSGTDTPLLSPVPNMFG---RGRKASAALE 350

Query: 344 KVVERRQRRMIKNRESAARSRARKQV 369
           KV+ERR RRMIKNRESAARSRARKQ 
Sbjct: 351 KVIERRHRRMIKNRESAARSRARKQA 376


>30226.m002055 DNA binding protein, putative
          Length = 310

 Score =  125 bits (313), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 82/128 (64%), Gaps = 10/128 (7%)

Query: 42  PLARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGP----Q 97
           PLARQ S+YSLT DE+Q  +G +GK   SMN+DELLKN+WTAE    +     G     Q
Sbjct: 23  PLARQNSMYSLTLDEVQHQLGDLGKPLSSMNLDELLKNVWTAEANHTIGMEVEGTQLANQ 82

Query: 98  ESLQRQGSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVANVPQRQQTLGEMTLEEFL 157
            +LQRQ SL+L   LS+KTVDEVW+DI +   N             RQ TLGEMTLE+FL
Sbjct: 83  TALQRQASLSLTSALSKKTVDEVWRDIQEGKNNEGKKSRD------RQPTLGEMTLEDFL 136

Query: 158 VRAGVVRE 165
           V+AGVV E
Sbjct: 137 VKAGVVAE 144



 Score = 52.4 bits (124), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/28 (85%), Positives = 26/28 (92%)

Query: 342 VEKVVERRQRRMIKNRESAARSRARKQV 369
           +EK VERRQ+RMIKNRESAARSRARKQ 
Sbjct: 245 MEKTVERRQKRMIKNRESAARSRARKQA 272


>29625.m000702 DNA binding protein, putative
          Length = 403

 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 74/175 (42%), Positives = 89/175 (50%), Gaps = 41/175 (23%)

Query: 38  PGNFP---LARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAAST 94
           P N P   L RQ+SIYSLT DE Q T+   GK+FGSMNMDE L +IW AEE Q    +S+
Sbjct: 24  PRNLPFSSLGRQSSIYSLTLDEFQHTLCESGKNFGSMNMDEFLTSIWNAEENQATATSSS 83

Query: 95  GP-----------------------------QESLQRQGSLTLPRTLSQKTVDEVWKDIS 125
                                          Q SL RQGSLTLP  L +KTVDEVW +I 
Sbjct: 84  DRINNTNNNRGNRLSSFNDHLSANDHRAISRQPSLPRQGSLTLPAPLCRKTVDEVWSEIH 143

Query: 126 KE------YVNXXXXXXXVANVPQ---RQQTLGEMTLEEFLVRAGVVREDAQIAG 171
           +E      + +           P+   RQ T GEMTLE+FLV+AG+VRE    A 
Sbjct: 144 REQQRGQGHSSTSSSGDNNMQNPESAARQPTFGEMTLEDFLVKAGIVREHGSPAA 198



 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/41 (82%), Positives = 35/41 (85%), Gaps = 2/41 (4%)

Query: 331 GGLRGRRAT--GAVEKVVERRQRRMIKNRESAARSRARKQV 369
           GGLRGR+    G VEKVVERRQRRMIKNRESAARSRARKQ 
Sbjct: 329 GGLRGRKRIIDGPVEKVVERRQRRMIKNRESAARSRARKQA 369


>30055.m001548 conserved hypothetical protein
          Length = 358

 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/142 (46%), Positives = 82/142 (57%), Gaps = 15/142 (10%)

Query: 42  PLARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGPQES-- 99
           PL+ Q S+ SLT +E+Q   G   K FGSMNMDE L N+W++ E   +       Q +  
Sbjct: 41  PLSGQNSLLSLTLNEIQHKSG---KSFGSMNMDEFLANLWSSVEENQVTPQPNQLQHAKD 97

Query: 100 ---------LQRQGSLTLPRTLSQKTVDEVWKDISKEYVNXXXXXXXVA-NVPQRQQTLG 149
                    L RQGS ++P  L +KTVDEVW +I KE           A   PQRQQTLG
Sbjct: 98  NGSVINLPPLARQGSFSIPAPLCKKTVDEVWFEIQKEQPERQKPSNIDAREPPQRQQTLG 157

Query: 150 EMTLEEFLVRAGVVREDAQIAG 171
           EMTLE+FLV+AGVV+E  Q AG
Sbjct: 158 EMTLEDFLVKAGVVQEATQSAG 179



 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 28/36 (77%)

Query: 334 RGRRATGAVEKVVERRQRRMIKNRESAARSRARKQV 369
           + R   G  E VVERRQRRMIKNRESAARSRARKQ 
Sbjct: 262 KKRIIDGPPEVVVERRQRRMIKNRESAARSRARKQA 297


>30089.m001012 DNA binding protein, putative
          Length = 238

 Score = 84.0 bits (206), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 59/138 (42%), Positives = 84/138 (60%), Gaps = 12/138 (8%)

Query: 32  GGGSRLPGNFPLARQTSIYSLTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVA 91
           G  S L   + L RQ S +SLT +E+++ +  +GK  GSMN+DELLKN+W+  E  ++  
Sbjct: 7   GQQSHLQPPYQLRRQNSWFSLTLNEVENQLENLGKPLGSMNLDELLKNVWST-EANHLDI 65

Query: 92  ASTGPQESLQRQGSLTLPRTLSQKTVDEVWKDI----SKEYVNXXXXXXXVANVPQRQQT 147
            +T    SLQ+Q SLTL R LS KTVD+VWK+I     K +              +++ T
Sbjct: 66  ENTSSASSLQQQSSLTLARALSGKTVDQVWKEILQGQKKRFCQE-------TKAQEKEPT 118

Query: 148 LGEMTLEEFLVRAGVVRE 165
           LGE+TLE+FLV+AG+  E
Sbjct: 119 LGEITLEDFLVQAGLFAE 136



 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 28/39 (71%)

Query: 331 GGLRGRRATGAVEKVVERRQRRMIKNRESAARSRARKQV 369
             ++ R A   VEK +ERR RR IKNRESAARSRARKQ 
Sbjct: 175 ASVQKRDAPDTVEKSIERRLRRKIKNRESAARSRARKQA 213


>29908.m005963 DNA binding protein, putative
          Length = 310

 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 63/124 (50%), Gaps = 25/124 (20%)

Query: 52  LTFDELQSTMGGIGKDFGSMNMDELLKNIWTAEETQNMVAASTGPQESLQRQ-------- 103
           +TFD+L    G +GK   +M +DE LKN+ + EE Q  +  +  P  S            
Sbjct: 16  ITFDQL----GNVGKLLSTMKLDEFLKNVISVEEAQ--LLQNVNPSSSSSSSSSSSARPF 69

Query: 104 --GSLTLPR-TLSQKTVDEVWKDI-SKEYVNXXXXXXXVANVPQRQQTLGEMTLEEFLVR 159
             G   L    LS+K VD+ WKDI ++E+VN              QQ LGE +LE+FLVR
Sbjct: 70  FLGDFDLNNGMLSKKPVDDAWKDIDNQEHVNVLANQSI-------QQRLGETSLEDFLVR 122

Query: 160 AGVV 163
           AGVV
Sbjct: 123 AGVV 126



 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/36 (72%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 334 RGRRATGAV-EKVVERRQRRMIKNRESAARSRARKQ 368
           + RR +  V EK +ERRQ+RMIKNRESAARSRARKQ
Sbjct: 225 KKRRYSDEVMEKTIERRQKRMIKNRESAARSRARKQ 260