Jatropha Genome Database

JcCA0030161.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0030161.10 + phase: 0 /partial
         (167 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30131.m007117 farnesyl-diphosphate farnesyltransferase, putative      313   4e-86

>30131.m007117 farnesyl-diphosphate farnesyltransferase, putative
          Length = 412

 Score =  313 bits (801), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 147/163 (90%), Positives = 156/163 (95%)

Query: 1   FHASELEDLAPDVLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPRQIWSKYVDKLEDL 60
           FHAS  EDLAPD LSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWP QIWSKYV KLEDL
Sbjct: 184 FHASGTEDLAPDTLSNSMGLFLQKTNIIRDYLEDINEIPKSRMFWPHQIWSKYVTKLEDL 243

Query: 61  KYEENSLKAVRCLNDMVTNALMHVDDCLKYMSALRDPAIFRFCVIPQIMAIGTLALCYNN 120
           KYEENS+KAV+CLNDMVTNAL+H+DDCLKYMSALRDP+IFRFC IPQIMAIGTLALCYNN
Sbjct: 244 KYEENSVKAVQCLNDMVTNALIHMDDCLKYMSALRDPSIFRFCAIPQIMAIGTLALCYNN 303

Query: 121 IEVFRGVVKMRRGLTAKVIYQTKSMADVYGAFFDFSCMLKSKV 163
           +EVFRGVVKMRRGLTAKVI +TK+MADVYGAF+DFSCMLKSKV
Sbjct: 304 VEVFRGVVKMRRGLTAKVIDRTKTMADVYGAFYDFSCMLKSKV 346