Jatropha Genome Database
- JcCA0029841.30
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0029841.30 + phase: 0 /partial
(361 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29727.m000492 nucleolysin tia-1, putative 593 e-170
29739.m003726 nucleolysin tia-1, putative 521 e-148
28226.m000878 nucleolysin tia-1, putative 465 e-131
30169.m006434 nuclear acid binding protein, putative 138 4e-33
30170.m014217 nuclear acid binding protein, putative 137 1e-32
29801.m003218 nuclear acid binding protein, putative 134 9e-32
29666.m001436 nuclear acid binding protein, putative 132 3e-31
29842.m003612 nuclear acid binding protein, putative 130 1e-30
30183.m001303 spliceosome associated protein, putative 103 1e-22
28644.m000904 polyadenylate-binding protein, putative 102 3e-22
29801.m003152 polyadenylate-binding protein, putative 100 2e-21
30170.m013847 polyadenylate-binding protein, putative 98 5e-21
30078.m002213 polyadenylate-binding protein, putative 95 5e-20
30146.m003481 polyadenylate-binding protein, putative 93 1e-19
30147.m013835 ribonucleoprotein, chloroplast, putative 85 6e-17
30078.m002323 ribonucleoprotein, chloroplast, putative 75 5e-14
29680.m001693 rrm-containing protein, putative 75 5e-14
30152.m002412 ribonucleoprotein, chloroplast, putative 71 9e-13
30008.m000803 ribonucleoprotein, chloroplast, putative 69 3e-12
30138.m003973 glycine-rich RNA-binding protein, putative 67 1e-11
30054.m000821 ribonucleoprotein, chloroplast, putative 67 1e-11
30183.m001297 splicing factor, putative 66 2e-11
29577.m000447 RNA recognition motif-containingprotein, putative 65 7e-11
29629.m001443 glycine-rich RNA-binding protein, putative 64 1e-10
29706.m001348 Heterogeneous nuclear ribonucleoprotein A1, putative 63 3e-10
29633.m000882 glycine-rich RNA-binding protein, putative 62 4e-10
29889.m003323 Flowering time control protein FCA, putative 62 5e-10
29948.m000699 glycine-rich RNA-binding protein, putative 62 5e-10
28582.m000318 conserved hypothetical protein 61 9e-10
30032.m000469 RNA binding protein, putative 60 2e-09
30008.m000830 Heterogeneous nuclear ribonucleoprotein 27C, putative 59 4e-09
30076.m004447 ribonucleoprotein, chloroplast, putative 58 5e-09
29333.m001057 ribonucleoprotein, chloroplast, putative 58 6e-09
28976.m000161 RNA binding protein, putative 58 6e-09
28462.m000127 glycine-rich RNA-binding protein, putative 58 6e-09
30174.m009088 glycine-rich RNA-binding protein, putative 58 7e-09
30147.m014250 zinc finger protein, putative 55 4e-08
29923.m000811 RNA-binding region-containing protein, putative 54 9e-08
29742.m001371 arginine/serine-rich splicing factor, putative 54 1e-07
30170.m013735 RNA-binding region-containing protein, putative 54 1e-07
29983.m003293 RNA binding protein, putative 53 2e-07
29647.m002041 RNA binding protein, putative 53 3e-07
29878.m000232 RNA binding protein, putative 52 4e-07
30170.m013671 DAZ-associated protein, putative 52 4e-07
29917.m002004 RNA binding protein, putative 52 5e-07
27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative 52 5e-07
30094.m000674 dc50, putative 52 6e-07
30099.m001684 Heterogeneous nuclear ribonucleoprotein A1, putative 51 7e-07
29581.m000256 serine/arginine rich splicing factor, putative 51 8e-07
30076.m004440 RNA-binding region-containing protein, putative 51 8e-07
29629.m001425 Heterogeneous nuclear ribonucleoprotein A1, putative 51 9e-07
29900.m001607 Heterogeneous nuclear ribonucleoprotein A1, putative 51 1e-06
29973.m000409 Eukaryotic translation initiation factor 3 subunit... 50 1e-06
29154.m000213 cold-inducible RNA binding protein, putative 50 2e-06
30006.m000276 Heterogeneous nuclear ribonucleoprotein A1, putative 50 2e-06
29999.m000207 RNA binding protein, putative 50 2e-06
29807.m000475 glycine-rich RNA-binding protein, putative 49 4e-06
29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative 49 5e-06
>29727.m000492 nucleolysin tia-1, putative
Length = 422
Score = 593 bits (1530), Expect = e-170, Method: Compositional matrix adjust.
Identities = 284/311 (91%), Positives = 292/311 (93%), Gaps = 1/311 (0%)
Query: 25 YHPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCK 84
YHP GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVF+STG VE CK
Sbjct: 25 YHP-GLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFASTGPVESCK 83
Query: 85 LIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVG 144
LIRKEKSSYGFIHY+DRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGH+NIFVG
Sbjct: 84 LIRKEKSSYGFIHYFDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHYNIFVG 143
Query: 145 DLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
DLSPEVTDATLFACFSVY SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW
Sbjct: 144 DLSPEVTDATLFACFSVYHSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 203
Query: 205 LGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYV 264
LGSRQIRCNWATKGA VVELTNG+SEEGK+TA N+APENNPQYTTVYV
Sbjct: 204 LGSRQIRCNWATKGATSNDDKQSSDAKSVVELTNGSSEEGKETANNDAPENNPQYTTVYV 263
Query: 265 GNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILC 324
GNLAPEVTQLDLHRHFH+LGAGVIEEVRVQRDKGFGFVR+STHAEAALAIQMGNTQSIL
Sbjct: 264 GNLAPEVTQLDLHRHFHSLGAGVIEEVRVQRDKGFGFVRFSTHAEAALAIQMGNTQSILY 323
Query: 325 GKQIKCSWGSK 335
GKQIKCSWGSK
Sbjct: 324 GKQIKCSWGSK 334
>29739.m003726 nucleolysin tia-1, putative
Length = 358
Score = 521 bits (1342), Expect = e-148, Method: Compositional matrix adjust.
Identities = 249/310 (80%), Positives = 275/310 (88%), Gaps = 3/310 (0%)
Query: 26 HPAGLLAPPQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKL 85
HPA L+A PQIEPI SGNLPPGFD +TCRSVYVGNIH QVTEPLLQEVFS+TGL+EGCKL
Sbjct: 17 HPA-LVAAPQIEPILSGNLPPGFDSTTCRSVYVGNIHPQVTEPLLQEVFSNTGLIEGCKL 75
Query: 86 IRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGD 145
IRKEKSSYGF+ Y+DRRSAAL+I++LNGRHLFGQPIKVNWAYAS QREDTSGHFNIFVGD
Sbjct: 76 IRKEKSSYGFVDYFDRRSAALSIVTLNGRHLFGQPIKVNWAYASSQREDTSGHFNIFVGD 135
Query: 146 LSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWL 205
LSPEVTDATL+A F+++PSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQ+AIN+L GKW+
Sbjct: 136 LSPEVTDATLYASFALFPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQNAINELNGKWI 195
Query: 206 GSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVG 265
GSRQIRCNWA KG VVELTNGTSE+ ++ ++APENNPQYTTVYVG
Sbjct: 196 GSRQIRCNWAAKGTTSNDDKQSSDAKSVVELTNGTSEDSQE-KNDDAPENNPQYTTVYVG 254
Query: 266 NLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCG 325
NLAPEVT +DLHRHF+ LGAG IE+VRVQRDKGFGFVRYSTHAEAALAIQMGN + IL G
Sbjct: 255 NLAPEVTSVDLHRHFYGLGAGTIEDVRVQRDKGFGFVRYSTHAEAALAIQMGNAR-ILYG 313
Query: 326 KQIKCSWGSK 335
K +KCSWGSK
Sbjct: 314 KPVKCSWGSK 323
>28226.m000878 nucleolysin tia-1, putative
Length = 417
Score = 465 bits (1196), Expect = e-131, Method: Compositional matrix adjust.
Identities = 223/312 (71%), Positives = 255/312 (81%), Gaps = 2/312 (0%)
Query: 25 YHPAGLLAP-PQIEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGC 83
YHP L A Q+EPIPSGNLPPGFD S CRSVYVGNIH VTE LL EVF + G + GC
Sbjct: 9 YHPGVLAAAMSQMEPIPSGNLPPGFDSSACRSVYVGNIHVNVTEKLLAEVFQTAGPLAGC 68
Query: 84 KLIRKEKSSYGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFV 143
KLIRK+KSSYGF+ Y+DR AA+AI++L+GR L+GQ +KVNWAYA+ QREDTSGHF+IFV
Sbjct: 69 KLIRKDKSSYGFVDYHDRSCAAVAIMTLHGRQLYGQALKVNWAYANSQREDTSGHFHIFV 128
Query: 144 GDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 203
GDLSPEVTDATLFACFSVY SCSDARVMWD KTGRS+G+GFVSFRNQ++AQSAINDL+GK
Sbjct: 129 GDLSPEVTDATLFACFSVYNSCSDARVMWDHKTGRSKGYGFVSFRNQREAQSAINDLSGK 188
Query: 204 WLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVY 263
WLG+RQIRCNWATKG+ V LT+G+SE G++ A +APENNP YTTVY
Sbjct: 189 WLGNRQIRCNWATKGSASNEDKQIGDNQNAVILTSGSSEGGQENANEDAPENNPAYTTVY 248
Query: 264 VGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSIL 323
VGNL EVTQ +LH FH LGAG+IEEVRVQRDKGFGFVRY+TH EAA AIQM N + I+
Sbjct: 249 VGNLCHEVTQSELHCQFHTLGAGIIEEVRVQRDKGFGFVRYTTHEEAASAIQMANGK-IV 307
Query: 324 CGKQIKCSWGSK 335
GK +KCSWGSK
Sbjct: 308 RGKPMKCSWGSK 319
>30169.m006434 nuclear acid binding protein, putative
Length = 412
Score = 138 bits (348), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 101/310 (32%), Positives = 157/310 (50%), Gaps = 23/310 (7%)
Query: 40 PSGNLPPGF-DPST---CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK----EKS 91
P+ P G+ P+T R++++G++ V E L F+ TG V K+IR +
Sbjct: 4 PTATNPGGYHQPATLEEVRTLWIGDLQYWVDENYLSSCFAHTGEVLSIKIIRNKITGQPE 63
Query: 92 SYGFIHYYDRRSAALAILSLNGRHLFG--QPIKVNWA-YASGQREDTSG-HFNIFVGDLS 147
YGF+ + +A + + NG + G Q ++NWA + G+R +G +IFVGDLS
Sbjct: 64 GYGFVEFVSHVAAERILQTYNGTQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLS 123
Query: 148 PEVTDATLFACFSV-YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLG 206
P+VTD L F YPS A+V+ D TGRS+G+GFV F ++ + A+ ++ G +
Sbjct: 124 PDVTDYLLQETFRANYPSVRGAKVVTDPNTGRSKGYGFVKFGDENERNRAMTEMNGVFCS 183
Query: 207 SRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGN 266
+R +R + AT + L T+ A N+ TT++VGN
Sbjct: 184 TRPMRISAATPKKTAAYQQQYATAKAIYPLPAYTAPVQVVPADNDITN-----TTIFVGN 238
Query: 267 LAPEVTQLDLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGK 326
L P VT+ +L F L G I V++ +G GFV+++T A A AIQ Q + G+
Sbjct: 239 LDPNVTEEELRPIF--LQFGEIVYVKIPVGRGCGFVQFATRASAEEAIQ--RMQGHVIGQ 294
Query: 327 Q-IKCSWGSK 335
Q ++ SWG K
Sbjct: 295 QPVRISWGRK 304
>30170.m014217 nuclear acid binding protein, putative
Length = 443
Score = 137 bits (344), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 94/290 (32%), Positives = 153/290 (52%), Gaps = 26/290 (8%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL 109
R+V++G++H + E L F+STG + K+IR +++ YGF+ +Y +A +
Sbjct: 109 RTVWIGDLHHWMDENYLHTCFASTGEIVSIKVIRNKQTGLSEGYGFVEFYTHATAEKVLQ 168
Query: 110 SLNGRHLFG--QPIKVNWA-YASG-QREDTSGHFNIFVGDLSPEVTDATLFACF-SVYPS 164
+ G + QP ++NWA +++G +R D + +IFVGDL+ +VTD+ L F S YPS
Sbjct: 169 NYAGILMPNTEQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSLLHETFVSRYPS 228
Query: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXX 224
A+V++D TGRS+G+GFV F + + A+ ++ G + SR +R AT
Sbjct: 229 VKAAKVVFDANTGRSKGYGFVRFGDDNERTQAMTEMNGVYCSSRAMRIGAATP---RKST 285
Query: 225 XXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG 284
V +G + + +TN TT++VG L P VT DL + F G
Sbjct: 286 GYQHQGGYVSNGASGQAFQADGDSTN---------TTIFVGGLDPNVTDEDLKQPFSQYG 336
Query: 285 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
I V++ KG GFV++++ + A A+Q N + GKQ ++ SWG
Sbjct: 337 E--IVSVKIPVGKGCGFVQFASRSNAEEALQKLN--GTVIGKQTVRLSWG 382
>29801.m003218 nuclear acid binding protein, putative
Length = 438
Score = 134 bits (336), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 93/293 (31%), Positives = 151/293 (51%), Gaps = 22/293 (7%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAI 108
++++VG++ + E L FS TG V K+IR +++ YGFI +Y +A +
Sbjct: 105 SKTIWVGDLLHWMDETYLHSCFSHTGEVTSVKVIRNKQTGQPEGYGFIEFYSHATAEKVL 164
Query: 109 LSLNGRHL--FGQPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPS 164
+ NG + QP ++NWA +A +R +T +IFVGDL+ +VTDA L FS Y S
Sbjct: 165 QNYNGSMMPNADQPFRLNWASFAGERRTETGSDLSIFVGDLAADVTDAMLQETFSSKYLS 224
Query: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXX 224
A+V+ D TGRS+G+GFV F ++ + A+ ++ G + SR +R AT
Sbjct: 225 VKGAKVVTDLNTGRSKGYGFVRFGDENERSRAMMEMNGVYCSSRPMRIGVATPKKSPAYQ 284
Query: 225 XXXXXXXXVV---ELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFH 281
V+ NG+ +G + + NN TT++VG + +++ DL + F
Sbjct: 285 QQYSSQALVLAGGHAPNGSMAQGSQS---DGDSNN---TTIFVGGIDSDISDEDLRQPFS 338
Query: 282 ALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQ-IKCSWG 333
G + V++ KG GFV+++ A A+Q N +I GKQ ++ SWG
Sbjct: 339 QFGE--VVSVKIPAGKGCGFVQFADRKSAEDALQSLNGTTI--GKQTVRLSWG 387
>29666.m001436 nuclear acid binding protein, putative
Length = 404
Score = 132 bits (332), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 90/290 (31%), Positives = 151/290 (52%), Gaps = 27/290 (9%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAI 108
+S+++G++ + E L +FS TG V K+IR +++ YGFI + +R +A +
Sbjct: 65 IKSLWIGDLQQWMDEGYLFNIFSGTGEVVSAKVIRNKQTGMPEGYGFIEFINRAAAERIL 124
Query: 109 LSLNGRHLFG--QPIKVNWA-YASGQR-EDTSGHFNIFVGDLSPEVTDATLFACF-SVYP 163
+ NG + Q ++NWA A+G+R +D + +FVGDL+P+V D L F +VYP
Sbjct: 125 QTYNGTQMPNTEQNFRLNWATLAAGERRQDDGPDYTVFVGDLAPDVNDFILQETFRTVYP 184
Query: 164 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXX 223
S A+V+ D+ TGR++G+GFV F ++ + + A+ ++ G++ +R +R A
Sbjct: 185 SVKGAKVVTDRLTGRTKGYGFVRFGDENEQRRAMVEMNGQYCSTRAMRIG----PAATKK 240
Query: 224 XXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHAL 283
+ T GT EN+P TT++VG L P V+ L + F
Sbjct: 241 PAVQQYQKAPYQSTQGTQG-----------ENDPNNTTIFVGALDPSVSDEHLRQVFGKY 289
Query: 284 GAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
G V V++ K GFV+++ A A A+ +G + L G+ I+ SWG
Sbjct: 290 GELV--HVKIPAGKRCGFVQFANRACAEQAL-LGLNGTQLAGQSIRLSWG 336
>29842.m003612 nuclear acid binding protein, putative
Length = 430
Score = 130 bits (327), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 88/289 (30%), Positives = 147/289 (50%), Gaps = 24/289 (8%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAI 108
R++++G++ + E + F+ TG V K+IR +++ YGFI + +A +
Sbjct: 88 VRTLWIGDLQYWMDENYINSCFAHTGEVTSVKVIRNKQTGQVEGYGFIEFGSHGTAERIL 147
Query: 109 LSLNGRHLFG--QPIKVNWA-YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV-YPS 164
+ NG + Q ++NWA ++ G + D + F IFVGDL+ +VTD L F V YPS
Sbjct: 148 QTYNGTPMPNGEQNFRLNWASFSGGDKRDDTPDFTIFVGDLAADVTDYILQDTFRVHYPS 207
Query: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXX 224
A+V+ D+ TGR++G+GFV F ++ + A+ D+ G + +R +R AT
Sbjct: 208 VKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTDMNGAFCSTRPMRIGLATN------- 260
Query: 225 XXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG 284
V +++ T EN+P TT++VGNL VT +L F G
Sbjct: 261 ------KNAVTGQQYPKASYQNSQTQGENENDPNNTTIFVGNLDSNVTDDNLRELFGRYG 314
Query: 285 AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCSWG 333
+ V++ K GFV+++ + A A+++ N S L G+ I+ SWG
Sbjct: 315 Q--LLHVKIPAGKRCGFVQFADRSCAEEALRLLNGTS-LSGQSIRLSWG 360
>30183.m001303 spliceosome associated protein, putative
Length = 376
Score = 103 bits (258), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 58/168 (34%), Positives = 94/168 (55%), Gaps = 7/168 (4%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILS 110
+ YVGN+ QV+E LL E+F G V + + ++ YGF+ + A AI
Sbjct: 26 TAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDRVTNLHQGYGFVEFRSEEDADYAIKI 85
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS-CSDAR 169
+N LFG+PI+VN A + D N+F+G+L P+V + L FS + ++ +
Sbjct: 86 MNMIKLFGKPIRVNKASQDKKSLDVGA--NLFIGNLDPDVDEKLLHDTFSAFGVIVTNPK 143
Query: 170 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
+M D +TG SRGFGF+S+ + + +AI + G++L +RQI ++A K
Sbjct: 144 IMRDPETGNSRGFGFISYDSFDASDAAIEAMNGQYLCNRQITVSYAYK 191
>28644.m000904 polyadenylate-binding protein, putative
Length = 657
Score = 102 bits (253), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 134/271 (49%), Gaps = 38/271 (14%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKE--KSS--YGFIHYYDRRSAALAILS 110
S+YVG++ V E L ++FS V ++ R + +SS YG++++ + + AA A+ +
Sbjct: 46 SLYVGDLEQNVNEEQLYDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDAANAMKA 105
Query: 111 LNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARV 170
LN L G+PI++ +++ SG+ N+F+ +L + + L F+ + + +V
Sbjct: 106 LNFTPLNGKPIRIMFSHRDPSIRK-SGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKV 164
Query: 171 MWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXX 230
D G+S+G+GFV F N++ A+ AI+ L G L +Q+ + +
Sbjct: 165 AVD-SNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVR------------- 210
Query: 231 XXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG---AGV 287
+ + T TN +P++T VYV NL+ +T DL + F G + +
Sbjct: 211 ------------QQERTRTN----GSPKFTNVYVKNLSETITNEDLEKVFGVYGTITSAL 254
Query: 288 IEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
+ + + + +GFGFV + AA A++ N
Sbjct: 255 VMKDQTGKSRGFGFVNFQDPDSAAAAVEKLN 285
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 85/301 (28%), Positives = 130/301 (43%), Gaps = 58/301 (19%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLI---RKEKSSYGFIHYYDR 101
DPS +S V++ N+ + + LL E F++ G V CK+ + YGF+ + +
Sbjct: 124 DPSIRKSGYGNVFIKNLDSTLDNKLLHETFAAFGTVLSCKVAVDSNGQSKGYGFVQFENE 183
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---FNIFVGDLSPEVTDATLFAC 158
SA AI L+G L + + V + +R T+G N++V +LS +T+ L
Sbjct: 184 ESAERAISFLDGMCLNDKQVYVGFFVRQQERTRTNGSPKFTNVYVKNLSETITNEDLEKV 243
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG-------KWLGSRQIR 211
F VY + + A VM DQ TG+SRGFGFV+F++ A +A+ L G W R R
Sbjct: 244 FGVYGTITSALVMKDQ-TGKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQR 302
Query: 212 CNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQY-----TTVYVGN 266
SE + E N +Y +Y+ N
Sbjct: 303 ----------------------------KSEREAELKAKFEQERNSRYERLKAANLYLKN 334
Query: 267 LAPEVTQLDLHRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQS 321
L + + L F G+ I +V D KG GFV +ST EA+ A++ N +
Sbjct: 335 LDDNINDVKLKELFSEFGS--ITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNGKM 392
Query: 322 I 322
I
Sbjct: 393 I 393
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
+VYV N+ +T L++VF G + +++ + +GF+++ D SAA A+ L
Sbjct: 225 NVYVKNLSETITNEDLEKVFGVYGTITSALVMKDQTGKSRGFGFVNFQDPDSAAAAVEKL 284
Query: 112 NGRHLFGQP----------------IKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATL 155
NG +K + R + N+++ +L + D L
Sbjct: 285 NGTTAHDDKAWYVGRAQRKSEREAELKAKFEQERNSRYERLKAANLYLKNLDDNINDVKL 344
Query: 156 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
FS + S + +VM D + G S+G GFV+F ++A A+ ++ GK +G + + A
Sbjct: 345 KELFSEFGSITSCKVMLDHQ-GVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIA 403
Query: 216 TK 217
+
Sbjct: 404 QR 405
>29801.m003152 polyadenylate-binding protein, putative
Length = 644
Score = 99.8 bits (247), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 126/278 (45%), Gaps = 42/278 (15%)
Query: 50 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIR----KEKSSYGFIHYYDRRSAA 105
P S+YVG++ VT+ L ++F+ G V ++ R + YG+++Y + AA
Sbjct: 20 PYVTTSLYVGDLEANVTDSHLYDLFNQVGQVVSVRVCRDLTTRRSLGYGYVNYSSPQDAA 79
Query: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 165
A+ LN L G PI++ +++ SG NIF+ +L + L FS + +
Sbjct: 80 RALDMLNFTPLNGSPIRIMYSHRDPSVR-KSGSGNIFIKNLDKGIDHKALHDTFSAFGNI 138
Query: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXX 225
+V D +G+S+G+GFV F N++ AQ AI L G L +Q+ +
Sbjct: 139 LSCKVATD-SSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLR-------- 189
Query: 226 XXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGA 285
++ +++A ++ NN VYV NL+ T+ DL + F
Sbjct: 190 ----------------KQERESAIDKTRFNN-----VYVKNLSETTTEEDLKKAFGEY-- 226
Query: 286 GVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
G I V RD K FGFV + +AA A++ N
Sbjct: 227 GTITSAVVMRDGDGKTKCFGFVNFENADDAATAVEALN 264
Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 125/291 (42%), Gaps = 35/291 (12%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDR 101
DPS +S +++ N+ + L + FS+ G + CK+ + YGF+ + +
Sbjct: 103 DPSVRKSGSGNIFIKNLDKGIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNE 162
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSPEVTDATLFAC 158
SA AI LNG L + + V +RE D + N++V +LS T+ L
Sbjct: 163 ESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDKTRFNNVYVKNLSETTTEEDLKKA 222
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
F Y + + A VM D G+++ FGFV+F N DA +A+ L GK ++ A K
Sbjct: 223 FGEYGTITSAVVMRD-GDGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKK 281
Query: 219 AGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHR 278
EL + K+ A + Q +Y+ NL + L +
Sbjct: 282 NEREN-----------ELKVRFEQSMKEAA------DKFQGANLYIKNLDDSIGDDRLKQ 324
Query: 279 HFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILC 324
F G I +V RD +G GFV +ST EA+ A+ N + ++
Sbjct: 325 LFSPF--GTITSCKVMRDPNGISRGSGFVAFSTPEEASKALMEMNGKMVVS 373
Score = 67.4 bits (163), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 87/188 (46%), Gaps = 19/188 (10%)
Query: 48 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSA 104
D + +VYV N+ TE L++ F G + ++R + +GF+++ + A
Sbjct: 197 IDKTRFNNVYVKNLSETTTEEDLKKAFGEYGTITSAVVMRDGDGKTKCFGFVNFENADDA 256
Query: 105 ALAILSLNGRHLFGQPIKVNWAYASGQRE------------DTSGHF---NIFVGDLSPE 149
A A+ +LNG+ + V A +RE + + F N+++ +L
Sbjct: 257 ATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSMKEAADKFQGANLYIKNLDDS 316
Query: 150 VTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQ 209
+ D L FS + + + +VM D G SRG GFV+F ++A A+ ++ GK + S+
Sbjct: 317 IGDDRLKQLFSPFGTITSCKVMRD-PNGISRGSGFVAFSTPEEASKALMEMNGKMVVSKP 375
Query: 210 IRCNWATK 217
+ A +
Sbjct: 376 LYVALAQR 383
>30170.m013847 polyadenylate-binding protein, putative
Length = 658
Score = 98.2 bits (243), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 76/280 (27%), Positives = 127/280 (45%), Gaps = 39/280 (13%)
Query: 50 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIR----KEKSSYGFIHYYDRRSAA 105
P S+YVG++ VT+ L +VF+ G V ++ R + YG+++Y + AA
Sbjct: 33 PYMPTSLYVGDLDLNVTDSQLYDVFNQVGQVVSVRVCRDLTTRRSLGYGYVNYTSPQDAA 92
Query: 106 LAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 165
A+ LN +PI++ +++ SG NIF+ +L + L FS + +
Sbjct: 93 RALDILNFTPFNNKPIRIMYSHRDPSIR-KSGTGNIFIKNLDKTIDHKALHDTFSSFGNI 151
Query: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXX 225
+V D +G+SRG+GFV F N++ AQ+AI+ L G L +Q+ +
Sbjct: 152 LSCKVATD-SSGQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLR-------- 202
Query: 226 XXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG- 284
+ +D+A+N+ ++ VYV NL+ T+ DL F G
Sbjct: 203 ----------------KHERDSASNK------KFNNVYVKNLSESTTEEDLKNIFGEYGE 240
Query: 285 --AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGNTQSI 322
+ VI + K FGFV + AA A++ N + I
Sbjct: 241 ITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESLNGKKI 280
Score = 87.0 bits (214), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 126/290 (43%), Gaps = 34/290 (11%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDR 101
DPS +S +++ N+ + L + FSS G + CK+ + YGF+ + +
Sbjct: 116 DPSIRKSGTGNIFIKNLDKTIDHKALHDTFSSFGNILSCKVATDSSGQSRGYGFVQFDNE 175
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHF--NIFVGDLSPEVTDATLFACF 159
+A AI LNG L + + V +R+ S N++V +LS T+ L F
Sbjct: 176 EAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDSASNKKFNNVYVKNLSESTTEEDLKNIF 235
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGA 219
Y + A +M D G+S+ FGFV+F N A A+ L GK + ++ A K +
Sbjct: 236 GEYGEITSAVIMRD-ADGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKS 294
Query: 220 GXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRH 279
+EL + + K+ + Q +Y+ NL ++ +L
Sbjct: 295 ERE-----------LELKSQFEQSMKEAV------DKYQGVNLYIKNLDDSISDENLKEL 337
Query: 280 FHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGNTQSILC 324
F G+I +V RD +G GFV +ST EA+ A+ N + ++
Sbjct: 338 FSDF--GMITSCKVMRDPSGISRGSGFVAFSTPEEASRALAEMNGKMVVS 385
Score = 71.2 bits (173), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 86/181 (47%), Gaps = 19/181 (10%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSAALAILSL 111
+VYV N+ TE L+ +F G + ++R + +GF+++ + +AA A+ SL
Sbjct: 216 NVYVKNLSESTTEEDLKNIFGEYGEITSAVIMRDADGKSKCFGFVNFENTDAAAKAVESL 275
Query: 112 NGRHLFGQPIKVNWAYASGQRE---------------DTSGHFNIFVGDLSPEVTDATLF 156
NG+ + + V A +RE D N+++ +L ++D L
Sbjct: 276 NGKKIDDKEWYVGKAQKKSERELELKSQFEQSMKEAVDKYQGVNLYIKNLDDSISDENLK 335
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
FS + + +VM D +G SRG GFV+F ++A A+ ++ GK + S+ + A
Sbjct: 336 ELFSDFGMITSCKVMRD-PSGISRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVALAQ 394
Query: 217 K 217
+
Sbjct: 395 R 395
>30078.m002213 polyadenylate-binding protein, putative
Length = 632
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 122/281 (43%), Gaps = 35/281 (12%)
Query: 49 DPSTCRS----VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKE---KSSYGFIHYYDR 101
DP R+ VYV N+ + LQE+F G V CK+ E +GF+ +
Sbjct: 92 DPDARRNGIGNVYVKNLSESIDNVGLQELFGEFGTVLSCKVATFEDGKSKGHGFVQFESE 151
Query: 102 RSAALAILSLNGRHLFGQPIKVNWAYASGQR---EDTSGHFNIFVGDLSPEVTDATLFAC 158
SA AI LNG + + I V R + + N++V +L P +T+ L
Sbjct: 152 DSANSAIEKLNGSIVGDKQIYVGKFVKKSDRVLPSPDAKYTNLYVKNLDPGITEELLQEK 211
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
FS + + D+ G SRGFGFV+F N DA+ A+ + G LGS+ + A K
Sbjct: 212 FSEFGKIVSVAIARDE-CGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKR 270
Query: 219 AGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHR 278
A L E+ K+ T N VYV N+ +VT +L
Sbjct: 271 AEREQI-----------LRRQFEEKRKEQITKFKGSN------VYVKNIDDDVTDEELRE 313
Query: 279 HFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAI 314
HF G I ++ +D KGFGFV +S+ EA+ A+
Sbjct: 314 HFSQ--CGTITSAKLMKDDKGRSKGFGFVCFSSSEEASKAV 352
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 73/287 (25%), Positives = 119/287 (41%), Gaps = 48/287 (16%)
Query: 44 LPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYY 99
+P + S+YVG +H V++ L + FS + ++ R + YG++++
Sbjct: 3 VPSTISATATASLYVGELHCDVSDGQLVDAFSEFNTLASVRVCRDSSTGRSLCYGYVNFI 62
Query: 100 DRRSAALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDA---TLF 156
A AI + N L G+ ++V W++ +G N++V +LS + + LF
Sbjct: 63 SPEDAIRAIETKNHTPLNGKLMRVMWSHRDPDAR-RNGIGNVYVKNLSESIDNVGLQELF 121
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
F SC A + G+S+G GFV F ++ A SAI L G +G +QI
Sbjct: 122 GEFGTVLSCKVATF----EDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFV 177
Query: 217 KGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDL 276
K + P + +YT +YV NL P +T+ L
Sbjct: 178 KKSDRVL-----------------------------PSPDAKYTNLYVKNLDPGITEELL 208
Query: 277 HRHFHALGAGVIEEVRVQRD-----KGFGFVRYSTHAEAALAIQMGN 318
F G I V + RD +GFGFV + +A A++ N
Sbjct: 209 QEKFSEFGK--IVSVAIARDECGSSRGFGFVNFENPDDARWAMERMN 253
Score = 75.1 bits (183), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 82/166 (49%), Gaps = 19/166 (11%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
++YV N+ +TE LLQE FS G + + R E S +GF+++ + A A+ +
Sbjct: 193 NLYVKNLDPGITEELLQEKFSEFGKIVSVAIARDECGSSRGFGFVNFENPDDARWAMERM 252
Query: 112 NGRHLFGQPIKVNWAYASGQREDT-SGHF--------------NIFVGDLSPEVTDATLF 156
NG L + + V A +RE F N++V ++ +VTD L
Sbjct: 253 NGTELGSKVLYVGRAQKRAEREQILRRQFEEKRKEQITKFKGSNVYVKNIDDDVTDEELR 312
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 202
FS + + A++M D K GRS+GFGFV F + ++A A+N G
Sbjct: 313 EHFSQCGTITSAKLMKDDK-GRSKGFGFVCFSSSEEASKAVNTFHG 357
>30146.m003481 polyadenylate-binding protein, putative
Length = 608
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 80/293 (27%), Positives = 136/293 (46%), Gaps = 45/293 (15%)
Query: 36 IEPIPSGNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS--- 92
+E + S LP DP S+YVG++ +VTE L+ VFSS G + L R +
Sbjct: 3 MEQLVSLKLPG--DPRPRLSLYVGDLDPEVTEMNLRTVFSSMGPIRNVHLCRCSLTGRSL 60
Query: 93 -YGFIHYYDRRSAALAILSLNGRHLFGQPIKVNWAYASGQRE---DTSGHFNIFVGDLSP 148
YG++++Y A A+ +LN +L G+ +++ W QR SG N++V +L
Sbjct: 61 CYGYVNFYRPYDAYKALSNLNHTYLKGKLMRIMWC----QRNPCARKSGIGNLYVKNLDA 116
Query: 149 EVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSR 208
+ A L + FS + + +V+ + G+S+G+GFV F ++ A +A L L +
Sbjct: 117 SIDSAGLQSLFSKFGTILSCKVVEEH--GKSKGYGFVQFDSEDSALAARTALHDTMLKEK 174
Query: 209 QIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLA 268
++ + K SE T+ +E ++T +YV NL+
Sbjct: 175 KLYVSRFVK----------------------KSERTTATSYDEL-----KFTNLYVKNLS 207
Query: 269 PEVTQLDLHRHFHALG---AGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMGN 318
++TQ H F A G + VI + + +GFGFV + + +A A+ N
Sbjct: 208 KDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDAKKAVDALN 260
Score = 85.5 bits (210), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 75/276 (27%), Positives = 119/276 (43%), Gaps = 32/276 (11%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS--YGFIHYYDRRSAALAILSLN 112
++YV N+ + LQ +FS G + CK++ + S YGF+ + SA A +L+
Sbjct: 108 NLYVKNLDASIDSAGLQSLFSKFGTILSCKVVEEHGKSKGYGFVQFDSEDSALAARTALH 167
Query: 113 GRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSVYPSCSD 167
L + + V+ +R + + N++V +LS ++T FS +
Sbjct: 168 DTMLKEKKLYVSRFVKKSERTTATSYDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIIS 227
Query: 168 ARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXX 227
A +M D G+SRGFGFV F + +DA+ A++ L G L SR + A A
Sbjct: 228 AVIMQDH-NGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAKA-------- 278
Query: 228 XXXXXVVELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALGAGV 287
E E KD + + + +YV NLA + L F +G
Sbjct: 279 -------ERKKILQHEYKDIFNTHMEKF--KASNLYVKNLALCIDNDKLQELFSC--SGK 327
Query: 288 IEEVRVQR-----DKGFGFVRYSTHAEAALAIQMGN 318
I +V R +GFGFV +S+ EA A+ N
Sbjct: 328 IVSAKVMRYDNGASRGFGFVCFSSPEEAKKALNALN 363
Score = 58.5 bits (140), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 80/174 (45%), Gaps = 21/174 (12%)
Query: 48 FDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK---EKSSYGFIHYYDRRSA 104
+D ++YV N+ +T+ +FS+ G + +++ + +GF+ + A
Sbjct: 193 YDELKFTNLYVKNLSKDMTQDAFHNMFSAFGEIISAVIMQDHNGKSRGFGFVDFESPEDA 252
Query: 105 ALAILSLNGRHLFGQPIKVNWAYASGQREDTSGH---------------FNIFVGDLSPE 149
A+ +LNG L + + V A A +R+ H N++V +L+
Sbjct: 253 KKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEYKDIFNTHMEKFKASNLYVKNLALC 312
Query: 150 VTDATLFACFSVYPSCSDARVM-WDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 202
+ + L FS A+VM +D G SRGFGFV F + ++A+ A+N L G
Sbjct: 313 IDNDKLQELFSCSGKIVSAKVMRYD--NGASRGFGFVCFSSPEEAKKALNALNG 364
>30147.m013835 ribonucleoprotein, chloroplast, putative
Length = 319
Score = 84.7 bits (208), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 84/171 (49%), Gaps = 9/171 (5%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
++VGN+ V L +F G VE ++I ++ +GF+ A A+
Sbjct: 143 IFVGNLPYDVDSQKLAMLFEQAGTVEIAEVIYNRETDTSRGFGFVSMSTVEEAEKAVEMF 202
Query: 112 NGRHLFGQPIKVNWAYASGQREDTSGH-----FNIFVGDLSPEVTDATLFACFSVYPSCS 166
+ L G+ + VN A G R + + I+VG+L +V +A L FS +
Sbjct: 203 HRHDLDGRLLTVNKAAPRGSRPERPPRVFEPGYRIYVGNLPWDVDNARLEQIFSEHGKVV 262
Query: 167 DARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
DARV++D+ TGRSRGFGFV+ + + AI L G+ L R IR N A +
Sbjct: 263 DARVVYDRDTGRSRGFGFVTMSTETELNDAIAALDGRSLDGRAIRVNVAEQ 313
>30078.m002323 ribonucleoprotein, chloroplast, putative
Length = 280
Score = 75.1 bits (183), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 89/180 (49%), Gaps = 21/180 (11%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
++VGN+ V L +F S G VE ++I + + +GF+ A
Sbjct: 94 LFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSSIDEVEAAAQQF 153
Query: 112 NGRHLFGQPIKVNWAYASGQREDT---SGHF-------------NIFVGDLSPEVTDATL 155
NG L G+ ++VN QRE + S F ++VG+LS V + L
Sbjct: 154 NGYELEGRALRVNSG-PPPQRESSFSRSPRFGGGGGGGESLEGNRLYVGNLSWSVDNLAL 212
Query: 156 FACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
+ FS DA+V++D+++GRSRGFGFV++ + ++ ++AI+ L G L R IR + A
Sbjct: 213 ESFFSEQGKVVDAKVVYDRESGRSRGFGFVTYSSAEEVENAIDSLNGAELDGRAIRVSVA 272
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 64/219 (29%), Positives = 88/219 (40%), Gaps = 25/219 (11%)
Query: 117 FGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKT 176
FGQ V+ + G S +FVG+L V A L F + V++D+ T
Sbjct: 73 FGQEEDVS---SDGDESSFSQDLKLFVGNLPFNVDSAQLAGLFESAGNVEMVEVIYDKVT 129
Query: 177 GRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVEL 236
GRSRGFGFV+ + + ++A G L R +R N
Sbjct: 130 GRSRGFGFVTMSSIDEVEAAAQQFNGYELEGRALRVNSGPPPQRESSFSR---------- 179
Query: 237 TNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHRHFHALG----AGVIEEVR 292
+ G E+ E N +YVGNL+ V L L F G A V+ +
Sbjct: 180 ---SPRFGGGGGGGESLEGN----RLYVGNLSWSVDNLALESFFSEQGKVVDAKVVYDRE 232
Query: 293 VQRDKGFGFVRYSTHAEAALAIQMGNTQSILCGKQIKCS 331
R +GFGFV YS+ E AI N L G+ I+ S
Sbjct: 233 SGRSRGFGFVTYSSAEEVENAIDSLNGAE-LDGRAIRVS 270
>29680.m001693 rrm-containing protein, putative
Length = 238
Score = 74.7 bits (182), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 54/82 (65%), Gaps = 3/82 (3%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ +F GDL EV D L FS +PS + ARV+ D++TG+++G+GFVSF N D +A+
Sbjct: 130 YRLFCGDLGNEVNDDVLSKAFSRFPSFNMARVVRDKRTGKTKGYGFVSFCNPSDLAAALK 189
Query: 199 DLTGKWLGSRQIRC---NWATK 217
++ GK++G+R I+ NW +
Sbjct: 190 EMNGKYVGNRPIKLRKSNWKER 211
>30152.m002412 ribonucleoprotein, chloroplast, putative
Length = 256
Score = 70.9 bits (172), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 89/195 (45%), Gaps = 26/195 (13%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+++G++ V + L + + A VM+D+ +GRSR F FV+ R +DA + I L
Sbjct: 82 LYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVIEKL 141
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
G +G R+I+ N K +L+ EE + ++P
Sbjct: 142 NGTQIGGREIKVNITEKPLASG------------DLSFLQLEESQFV---DSPHK----- 181
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAGVIEEV-RV---QRDKGFGFVRYSTHAEAALAIQM 316
VYVGNLA VT L F G + +V RV + G+GFV +S + AI
Sbjct: 182 -VYVGNLAKTVTSEILKNFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISS 240
Query: 317 GNTQSILCGKQIKCS 331
N S+L G++I+ +
Sbjct: 241 FN-NSLLEGQKIRVN 254
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/179 (30%), Positives = 83/179 (46%), Gaps = 17/179 (9%)
Query: 53 CRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKS----SYGFIHYYDRRSAALAI 108
+ +Y+GNI V L ++ G VE +++ + S + F+ A I
Sbjct: 79 AKRLYIGNIPRTVDNDELTKIVEEHGAVEKAEVMYDKYSGRSRRFAFVTMRTVEDANAVI 138
Query: 109 LSLNGRHLFGQPIKVNWA---YASG-----QREDT----SGHFNIFVGDLSPEVTDATLF 156
LNG + G+ IKVN ASG Q E++ S H ++VG+L+ VT L
Sbjct: 139 EKLNGTQIGGREIKVNITEKPLASGDLSFLQLEESQFVDSPH-KVYVGNLAKTVTSEILK 197
Query: 157 ACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
FS A+V T +S G+GFVSF ++D ++AI+ L ++IR N A
Sbjct: 198 NFFSEKGKVLSAKVSRVPGTSKSSGYGFVSFSEEEDVEAAISSFNNSLLEGQKIRVNKA 256
>30008.m000803 ribonucleoprotein, chloroplast, putative
Length = 285
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 78/166 (46%), Gaps = 6/166 (3%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
+Y GN+ V L + G E +++ + + F+ I +L
Sbjct: 115 LYFGNLPYNVDSAQLAGIIQDYGTPELVEVLYDRDTGRSRGFAFVTMSTVEDCNAVIENL 174
Query: 112 NGRHLFGQPIKVNWAYASGQREDT--SGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAR 169
+G G+ ++VN++ +E +FVG+LS VT +L F Y + AR
Sbjct: 175 DGSQFMGRILRVNFSDKPKPKEPLYPETEHKLFVGNLSWSVTSESLVEAFQEYGNIVGAR 234
Query: 170 VMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
V++D +TGRSRG+GFV + + + ++A+ L G L R +R + A
Sbjct: 235 VLYDGETGRSRGYGFVCYATRSEMENALVSLNGVELEGRAMRVSLA 280
>30138.m003973 glycine-rich RNA-binding protein, putative
Length = 267
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 49/75 (65%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG +S + D +L F Y +ARV+ D++TGRSRGF FV++ + ++A SAI L
Sbjct: 42 VFVGGISYQTDDTSLREAFGKYGEVIEARVIIDRETGRSRGFAFVTYTSSEEASSAIQAL 101
Query: 201 TGKWLGSRQIRCNWA 215
G+ L R++R N+A
Sbjct: 102 DGQDLHGRRVRVNYA 116
>30054.m000821 ribonucleoprotein, chloroplast, putative
Length = 278
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 88/176 (50%), Gaps = 13/176 (7%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS---YGFIHYYDRRSAALAILS 110
R +YV N+ ++ ++ +F G V ++I+++ + F+ A AI
Sbjct: 83 RKLYVFNLPWSLSVVDIKNLFGQCGTVTDVEIIKQKNGRSRGFAFVTLASGEEAQAAIDK 142
Query: 111 LNGRHLFGQPIKVNWA---------YASGQREDTSGHFNIFVGDLSPEVTDATLFACFSV 161
L+ + G+ I+V +A +G + H I+V +L+ +V L FS
Sbjct: 143 LDSHEVSGRIIRVEFAKRLKPPSPPSPTGTSARETRH-KIYVSNLAWKVRSTHLREFFST 201
Query: 162 YPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATK 217
S +RV++D TGRS G+GFVSF +++A++AI+ L GK L R +R ++ +
Sbjct: 202 NFSPVSSRVVFDSPTGRSSGYGFVSFATREEAEAAISALDGKELMGRPLRLKFSDR 257
>30183.m001297 splicing factor, putative
Length = 609
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 54/184 (29%), Positives = 87/184 (47%), Gaps = 20/184 (10%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL 109
R+V+ I + E + E FS G V +LI S G+I +YD S +AI
Sbjct: 226 RTVFAYQICLKADERDVYEFFSRAGKVRDVRLIMDRNSRRSKGVGYIEFYDVMSVPMAI- 284
Query: 110 SLNGRHLFGQPIKVNWAYA------------SGQREDTSGHFNIFVGDLSPEVTDATLFA 157
+L+G+ L GQP+ V + A +G + G ++VG+L +T+ L
Sbjct: 285 ALSGQPLLGQPVMVKPSEAEKNLVQSTTTVNAGSGPYSGGARRLYVGNLHFNITEDQLRQ 344
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK-WLGSRQIRCNWAT 216
F + ++ D+ TG +GFGFV F +DA++A+N L G+ + R I+ + T
Sbjct: 345 VFEPFGIVELVQLPLDE-TGHCKGFGFVQFARLEDAKNALN-LNGQVEIAGRPIKVSTVT 402
Query: 217 KGAG 220
G
Sbjct: 403 DQTG 406
>29577.m000447 RNA recognition motif-containingprotein, putative
Length = 902
Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 62/263 (23%), Positives = 111/263 (42%), Gaps = 32/263 (12%)
Query: 55 SVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYGFIHYYDRRSAALAILSLNGR 114
+++VGN+ VT+ L ++F+ G ++ SY F+++ AA A +L G
Sbjct: 23 NLWVGNLAPDVTDSDLMDLFAKYGALDSVTTYSSR--SYAFLYFKHVEDAAAAKDALQGT 80
Query: 115 HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQ 174
L G P+K+ +A + + N++VG +SP V+ L F + + + + D+
Sbjct: 81 LLRGNPVKIEFARPAKPSK------NLWVGGISPAVSKEQLEEEFLKFGKIEEFKFLRDR 134
Query: 175 KTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVV 234
T F+ + +DA A+ + GK LG QIR ++ + V+
Sbjct: 135 NTA------FIEYVKLEDALEAMRSMNGKRLGGDQIRVDFLRSQSVRRFTVSVLMPLFVM 188
Query: 235 ---ELTNGTSEEGKDTATNEAPENNPQYTTVYVGNLAPEVTQLDLHR-HFHALGAGVIEE 290
T+G +EG P ++VG P Q+D H + G IE
Sbjct: 189 FQHSQTSGGRKEG------------PPSNVLWVG--YPPSVQIDEQMLHNAMILFGEIER 234
Query: 291 VRVQRDKGFGFVRYSTHAEAALA 313
++ + + FV + + EA A
Sbjct: 235 IKSFPARHYSFVEFRSVDEARRA 257
>29629.m001443 glycine-rich RNA-binding protein, putative
Length = 134
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/79 (43%), Positives = 48/79 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+G LS D +L FS + ARV+ D+ TGRSRGFGFV F + A SA++ +
Sbjct: 38 LFIGGLSYGTNDDSLKDAFSGFGDVVTARVITDRDTGRSRGFGFVDFSSVDSASSALSAM 97
Query: 201 TGKWLGSRQIRCNWATKGA 219
G+ L R IR ++AT+ A
Sbjct: 98 DGQELHGRNIRVSYATERA 116
>29706.m001348 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 412
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 10/172 (5%)
Query: 51 STCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAAL 106
S+ ++VG I + TE FS G + ++R S +GF+ + D A
Sbjct: 76 SSQGKLFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFAD---LAA 132
Query: 107 AILSLNGRHLFG-QPIKVNWAYASGQRE--DTSGHFNIFVGDLSPEVTDATLFACFSVYP 163
A L H+ + ++V + E IFVG + P +T+ L FSVY
Sbjct: 133 ADRVLEEDHIIDDRAVEVKRTVPREEMEVKGVVRARKIFVGGIPPTLTEDELGEYFSVYG 192
Query: 164 SCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
+ + ++M D KTGRSRGFGFV+F + + + LG +++ A
Sbjct: 193 NIVEHQIMLDHKTGRSRGFGFVTFETEDSVEQIFSTGRTHELGGKRVEIKKA 244
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 80/196 (40%), Gaps = 41/196 (20%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG +S E T+ T + FS + +D+ +M D+ +GR RGFGFV+F + A + +
Sbjct: 81 LFVGGISWETTEETFTSYFSKFGEITDSVIMRDRHSGRPRGFGFVTFADLAAADRVLEE- 139
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNP--Q 258
+ + + E K T E E +
Sbjct: 140 ---------------------------------DHIIDDRAVEVKRTVPREEMEVKGVVR 166
Query: 259 YTTVYVGNLAPEVTQLDLHRHFHALGAGVIEEV----RVQRDKGFGFVRYSTHAEAALAI 314
++VG + P +T+ +L +F G V ++ + R +GFGFV + T
Sbjct: 167 ARKIFVGGIPPTLTEDELGEYFSVYGNIVEHQIMLDHKTGRSRGFGFVTFETEDSVEQIF 226
Query: 315 QMGNTQSILCGKQIKC 330
G T L GK+++
Sbjct: 227 STGRTHE-LGGKRVEI 241
>29633.m000882 glycine-rich RNA-binding protein, putative
Length = 166
Score = 62.0 bits (149), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 46/78 (58%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
+ FVG L+ +D L FS Y +++++ D++TGRSRGFGFV+F N++ + AI
Sbjct: 7 EYRCFVGGLAWATSDKALEEAFSAYGEVLESKIINDRETGRSRGFGFVTFNNEKSMRDAI 66
Query: 198 NDLTGKWLGSRQIRCNWA 215
+ G+ L R I N A
Sbjct: 67 EGMNGQNLDGRNITVNEA 84
>29889.m003323 Flowering time control protein FCA, putative
Length = 811
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/171 (28%), Positives = 84/171 (49%), Gaps = 11/171 (6%)
Query: 42 GNLPPGFDPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSYG----FIH 97
GN P + + ++VG++ +E ++ +F G V LI+ +++ F+
Sbjct: 149 GNSPDHTECGSFAKLFVGSVPRTASEEDIRPLFEQHGNVIEVALIKDKRTGQQQGCCFVK 208
Query: 98 YYDRRSAALAILSLNGRHLFGQ---PIKVNWAYASGQREDTSG-HFNIFVGDLSPEVTDA 153
Y A AI +L+ +H PI+V +A G+RE + +FVG L+ + T+
Sbjct: 209 YATSEEADRAIRALHNQHTLPGGIGPIQVR--FADGERERLGAVEYKLFVGSLNKQATEK 266
Query: 154 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKW 204
+ FS Y D +M D+ +SRG GFV + +++ A +AIN L G +
Sbjct: 267 EVEEIFSPYGHVEDVYLMRDEMK-QSRGCGFVKYSSREMALAAINALNGIY 316
>29948.m000699 glycine-rich RNA-binding protein, putative
Length = 126
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FV LS V + +L FS + S+ R+M+D+ +GRSRGFGFV+F + +A A + +
Sbjct: 27 LFVAGLSWSVDEKSLKDAFSSFGEVSEVRIMYDKDSGRSRGFGFVNFSKENEAVCAKDAM 86
Query: 201 TGKWLGSRQIRCNWA 215
GK L R +R ++A
Sbjct: 87 DGKALLGRPLRISFA 101
>28582.m000318 conserved hypothetical protein
Length = 534
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 78/186 (41%), Gaps = 11/186 (5%)
Query: 69 LLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSLNGRHLFGQPIKVN 124
L + F G +E +I + + YGFI Y S +A L + + G+ N
Sbjct: 281 FLAQAFRVHGEIEEGAVIYDKATGKSRGYGFITYKHMESTQIA-LRAPSKLIDGRLAVCN 339
Query: 125 WAYASGQREDTSGHF---NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRG 181
A T+ +++G LSPE+T L F + + V +D+ T SRG
Sbjct: 340 LACEGLTGASTTPDLAQRKLYIGGLSPEITSEMLLNFFGRHGEIEEGSVAYDKDTNESRG 399
Query: 182 FGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVEL--TNG 239
FGFV+++ + A+ AI+D K LG R I A G V L T G
Sbjct: 400 FGFVTYKTVEAAKKAIDD-PQKVLGGRSIIVKLADTHKGKTVQTQMPASVAPVPLLMTAG 458
Query: 240 TSEEGK 245
++ GK
Sbjct: 459 YTQPGK 464
>30032.m000469 RNA binding protein, putative
Length = 127
Score = 59.7 bits (143), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 46/76 (60%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FVG LS TD L FS Y +A ++ D+ RS+GFGFV+F ++ +A +A+++
Sbjct: 32 KLFVGGLSFYTTDKGLTEAFSQYGQVVEATIVSDRVLDRSKGFGFVTFASEDEAHNALSE 91
Query: 200 LTGKWLGSRQIRCNWA 215
+ GK L R I ++A
Sbjct: 92 MNGKTLNGRVIYVDYA 107
>30008.m000830 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 470
Score = 58.9 bits (141), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 80/176 (45%), Gaps = 29/176 (16%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAILSL 111
+++G I + TE L++ F G V ++R + + +GF+ + D + L
Sbjct: 8 LFIGGISWETTEDKLKDYFVQYGDVVQTVVMRDKTTGRPRGFGFVVFADPN---ILDRVL 64
Query: 112 NGRH-LFGQPIKVNWAYASGQREDT--SGHFN---------------IFVGDLSPEVTDA 153
+H + G+ ++ A + +++ SG+ N IFVG L P +TD
Sbjct: 65 QDKHTIDGRTVEAKKALSREEQQTNARSGNLNPPRNSGSGGNIRTKKIFVGGLPPALTDD 124
Query: 154 TLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 205
F Y +D +M+DQ T R RGFGF+SF N+ + +DL GK +
Sbjct: 125 EFRQYFEAYGLVTDVVIMYDQNTQRPRGFGFISFDNEDAVDRVLHKTFHDLNGKQV 180
>30076.m004447 ribonucleoprotein, chloroplast, putative
Length = 281
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 86/182 (47%), Gaps = 23/182 (12%)
Query: 50 PSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSSY----GFIHYYDRRSAA 105
P C +YV N+ L E+F G V ++ R ++ GF+ SA
Sbjct: 95 PRPC-ELYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAK 153
Query: 106 LAILSLNGRHLFGQPIKVNWA--YASGQREDT------------SGHFNIFVGDLSPEVT 151
AI +L+G + G+ ++V ++ SG+R F ++VG+L+ V
Sbjct: 154 NAIAALDGSDIGGREMRVKFSVDMNSGRRNPEPLSSAPTKNLFYESPFKVYVGNLAWTVK 213
Query: 152 DATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN----DLTGKWLGS 207
L FS + + ARV++D+K G++R +GF+SF + ++ +A++ D G+ L
Sbjct: 214 PEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAALSFNGKDFRGRILVV 273
Query: 208 RQ 209
R+
Sbjct: 274 RK 275
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 79/183 (43%), Gaps = 28/183 (15%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++V +L A L F Y + V + +TG SRG GFV+ + A++AI L
Sbjct: 100 LYVCNLPRSCDIAELVELFKPYGTVISVEVSRNPETGISRGCGFVTMGSINSAKNAIAAL 159
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
G +G R++R ++ V++ +G + AP N Y
Sbjct: 160 DGSDIGGREMRVKFS------------------VDMNSGRRN---PEPLSSAPTKNLFYE 198
Query: 261 T---VYVGNLAPEVTQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAALA 313
+ VYVGNLA V +L F G A V+ + + +++ +GF+ +S+ E A
Sbjct: 199 SPFKVYVGNLAWTVKPEELRDQFSKFGTVVSARVLYDRKAGKNRAYGFLSFSSTKERDAA 258
Query: 314 IQM 316
+
Sbjct: 259 LSF 261
>29333.m001057 ribonucleoprotein, chloroplast, putative
Length = 107
Score = 58.2 bits (139), Expect = 6e-09, Method: Composition-based stats.
Identities = 26/61 (42%), Positives = 40/61 (65%)
Query: 159 FSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
F+ P A+V++++ TGRSRGFGFVSF + +DA++A+N + G + R +R N A
Sbjct: 22 FADQPGVLSAKVIYERDTGRSRGFGFVSFESAEDAEAALNSMNGVEVEGRPLRLNLAADR 81
Query: 219 A 219
A
Sbjct: 82 A 82
>28976.m000161 RNA binding protein, putative
Length = 284
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 76/167 (45%), Gaps = 27/167 (16%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLV-EGCKLIRKEKSS---YGFIHYYDRRSAALAILSL 111
++VG ++++ L FS G V E ++ KE S +GF+ + D +A A
Sbjct: 8 LFVGGLNSKTDGDYLNLHFSKYGQVKETLIVMDKETGSSRGFGFVTFEDHSAADTAFR-- 65
Query: 112 NGRHLFGQPIKVNWA------------------YASGQREDTSGHF---NIFVGDLSPEV 150
+ + G+ + V WA ++G D IFVG L ++
Sbjct: 66 DQHFILGKKVDVKWATPRNPCHNSQEQNTIDPIQSNGDENDNRIELRTKKIFVGGLPHDI 125
Query: 151 TDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
++ FS + + DA VM++ TGRSRGFGFV+F ++ A + +
Sbjct: 126 SNEEFKDFFSTFGTVRDAVVMYNGVTGRSRGFGFVTFDSEDSADTVL 172
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/199 (23%), Positives = 81/199 (40%), Gaps = 25/199 (12%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG L+ + L FS Y + ++ D++TG SRGFGFV+F + A +A D
Sbjct: 8 LFVGGLNSKTDGDYLNLHFSKYGQVKETLIVMDKETGSSRGFGFVTFEDHSAADTAFRDQ 67
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQY- 259
++ +++ WAT N + D + EN+ +
Sbjct: 68 --HFILGKKVDVKWATPRN---------------PCHNSQEQNTIDPIQSNGDENDNRIE 110
Query: 260 ---TTVYVGNLAPEVTQLDLHRHFHALG----AGVIEEVRVQRDKGFGFVRYSTHAEAAL 312
++VG L +++ + F G A V+ R +GFGFV + + A
Sbjct: 111 LRTKKIFVGGLPHDISNEEFKDFFSTFGTVRDAVVMYNGVTGRSRGFGFVTFDSEDSADT 170
Query: 313 AIQMGNTQSILCGKQIKCS 331
++ Q C ++K +
Sbjct: 171 VLRNKYYQLKDCQIEVKMA 189
>28462.m000127 glycine-rich RNA-binding protein, putative
Length = 276
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG LS +VT+ L F+ Y + +VM ++ TGR RGFGF++F +++ AI ++
Sbjct: 9 IFVGGLSWDVTERQLENAFNRYGKIVECQVMLERDTGRPRGFGFITFSDRRSMDDAIREM 68
Query: 201 TGKWLGSRQIRCNWA 215
G+ G R I N A
Sbjct: 69 HGREFGDRVISVNKA 83
>30174.m009088 glycine-rich RNA-binding protein, putative
Length = 176
Score = 57.8 bits (138), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
++VG L+ EV +A L A F + D + DQ T + R FGFV+F ++DA +A++++
Sbjct: 14 LYVGGLADEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRAFGFVTFLEKEDAAAAMDNM 73
Query: 201 TGKWLGSRQIRCNWA 215
G L R + N+A
Sbjct: 74 DGAELYGRVLTVNYA 88
>30147.m014250 zinc finger protein, putative
Length = 798
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 43/78 (55%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
N+++G L P + D L FS + A+V+ D+ TG S+G+GFV +R+ Q A +AI
Sbjct: 498 NLYIGYLPPNLDDDGLIGLFSAFGDIVMAKVIKDRVTGVSKGYGFVKYRDIQMANNAIAS 557
Query: 200 LTGKWLGSRQIRCNWATK 217
+ G + R I A K
Sbjct: 558 MNGYRIDGRTIAVRVAGK 575
>29923.m000811 RNA-binding region-containing protein, putative
Length = 256
Score = 54.3 bits (129), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FVG L+ E + F Y +A ++ D+ TGRS+G+GFV+F+ + A+ A D
Sbjct: 17 KVFVGGLAWETPKEAMREHFEKYGEILEAVIISDKLTGRSKGYGFVTFKEPEAAKKACED 76
Query: 200 LTGKWLGSRQIRCNWATKGA 219
T + R+ CN A+ GA
Sbjct: 77 AT-PMINGRRANCNLASLGA 95
>29742.m001371 arginine/serine-rich splicing factor, putative
Length = 259
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 39/186 (20%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
IFVG+ E + L FS Y RV ++ GF FV F +++DA AI L
Sbjct: 5 IFVGNFEFETRQSELERLFSKY-----GRV---ERVDMKSGFAFVYFEDERDAADAIRGL 56
Query: 201 TGKWLG--SRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQ 258
G R++ WA +G G +G + N+ P
Sbjct: 57 DNISFGYDRRKLSVEWA-RGE------------------RGRHRDGSRSMANQRPTK--- 94
Query: 259 YTTVYVGNLAPEVTQL-DLHRHFHALGAGVIEEVRVQRDKGFGFVRYSTHAEAALAIQMG 317
T++V N P T++ D+ RHF G + VR++R+ F FV++ T +A A++
Sbjct: 95 --TLFVINFDPIHTRVEDIKRHFERYGE--VLHVRIRRN--FAFVQFETQEDATKALECT 148
Query: 318 NTQSIL 323
+ IL
Sbjct: 149 HMTKIL 154
>30170.m013735 RNA-binding region-containing protein, putative
Length = 259
Score = 53.9 bits (128), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 129 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 188
+GQ DT+ + +FVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+FR
Sbjct: 7 AGQFGDTT-YTKVFVGGLAWETQKDTMKKYFEQFGEILEAVVITDKATGRSKGYGFVTFR 65
Query: 189 NQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
+ + A A D + + R+ CN A+ G
Sbjct: 66 DPEAAMRACVD-SAPVIDGRRANCNLASLG 94
>29983.m003293 RNA binding protein, putative
Length = 267
Score = 53.1 bits (126), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 51/90 (56%), Gaps = 2/90 (2%)
Query: 129 SGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFR 188
SG DT+ + +FVG L+ E TL F + +A V++D+ TGRS+G+GFV+F+
Sbjct: 10 SGPFGDTT-YTKVFVGGLAWETHKETLKNYFQQFGEILEAVVIFDKNTGRSKGYGFVTFK 68
Query: 189 NQQDAQSAINDLTGKWLGSRQIRCNWATKG 218
+ A+ A D + + R+ CN A+ G
Sbjct: 69 EAEAARRACVD-SSPVIDGRRANCNLASLG 97
>29647.m002041 RNA binding protein, putative
Length = 436
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
N+F+ + E D L + F Y A+V D+ TG S+ FGFVS+ + AQ+AIN
Sbjct: 352 NLFIYHIPQEFGDQELASAFQPYGKVLSAKVFVDKATGVSKCFGFVSYDSPTAAQTAINM 411
Query: 200 LTGKWLGSRQIRCNW 214
+ G LG ++++
Sbjct: 412 MNGCQLGGKKLKVQL 426
>29878.m000232 RNA binding protein, putative
Length = 354
Score = 52.4 bits (124), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%)
Query: 132 REDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQ 191
RE + N+FV LS T L FS + ARV+ D+ +G S+GFGFV + + +
Sbjct: 45 REQAEPNTNLFVSGLSKRTTTEGLKQAFSKFGEVVQARVVTDRVSGYSKGFGFVRYGSLE 104
Query: 192 DAQSAINDLTGKWL 205
DA+ I + GK+L
Sbjct: 105 DAEKGIEGMDGKFL 118
>30170.m013671 DAZ-associated protein, putative
Length = 370
Score = 52.0 bits (123), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/190 (24%), Positives = 76/190 (40%), Gaps = 40/190 (21%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTGLVEGCKL----IRKEKSSYGFIHYYDRRSAALAILSL 111
++VG I +E L+ FS G V G + I K +GF+ + D +A +L
Sbjct: 8 IFVGGISRDTSEDALRVHFSKYGTVSGSLVAKDKITKNSRGFGFVWFSD---SAFVDKAL 64
Query: 112 NGRH-LFGQPIKVNWAYASGQR-----------------------EDTSGHFN------- 140
H + G+ ++V A ++ +++G+ N
Sbjct: 65 QDSHVILGRTVEVKKAIPKTEQLQFHRYQQQQQWQFPNQQKNSRLSESNGNGNGGDYFRT 124
Query: 141 --IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
IFVG LS +T+ F + D VM D T R RGFGFV+F ++ A+
Sbjct: 125 KKIFVGGLSSSLTEEQFKDYFESFGKIVDVVVMQDSSTNRPRGFGFVTFDSEDSVDKAME 184
Query: 199 DLTGKWLGSR 208
+ +G R
Sbjct: 185 KTFHELMGKR 194
>29917.m002004 RNA binding protein, putative
Length = 2256
Score = 52.0 bits (123), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 70/158 (44%), Gaps = 17/158 (10%)
Query: 54 RSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALAIL 109
R +++G + + T + F G + +++ K+ +GF+ Y D I
Sbjct: 1927 RKIFIGGLARETTTAQFVKHFGKYGEITDSVIMKDRKTGQPRGFGFVTYADPSVVDQVI- 1985
Query: 110 SLNGRHLF-GQPIKVNWAY---ASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSC 165
H+ G+ +++ A G R+ + IFVG + VT+ F Y
Sbjct: 1986 --QDSHVINGKQVEIKRTIPKGAIGARDFKTK--KIFVGGIPTTVTEVEFKEFFMQYGEV 2041
Query: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGK 203
+ ++M D T RSRGFGF++F D + A++DL K
Sbjct: 2042 IEHQIMRDHSTNRSRGFGFITF----DTEQAVDDLLAK 2075
>27613.m000635 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 478
Score = 51.6 bits (122), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 78/178 (43%), Gaps = 27/178 (15%)
Query: 51 STCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAAL 106
S +++G I E L+E FS G V ++R + +GF+ + D A
Sbjct: 3 SDLGKLFIGGISWDTDEERLKEYFSKYGEVVEAVIMRDRTTGRARGFGFVVFADPAVAER 62
Query: 107 AILSLNGRHLF-GQPIKVNWAYASG-----QREDTSGHFN--------IFVGDLSPEVTD 152
I+ +H+ G+ ++ A R +S H + IFVG L+ VTD
Sbjct: 63 VIVD---KHMIDGRTVEAKKAVPRDDQHILNRNTSSIHGSPGPGRTKKIFVGGLASTVTD 119
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA-----QSAINDLTGKWL 205
F + + +D VM+D T R RGFGF+++ + +DA ++L GK +
Sbjct: 120 NDFKKYFEQFGNITDVVVMYDHNTQRPRGFGFITY-DSEDAVDRVLHKTFHELNGKMV 176
>30094.m000674 dc50, putative
Length = 210
Score = 51.6 bits (122), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 43/77 (55%)
Query: 139 FNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIN 198
+ F+G LS +D L F + +A+V+ D+ +GRSRGFGFV+F ++ + AI
Sbjct: 7 YRCFIGGLSWSTSDRGLKEAFEKFGHLLEAKVVVDKFSGRSRGFGFVTFDEKKAMEEAIE 66
Query: 199 DLTGKWLGSRQIRCNWA 215
++ G L R I + A
Sbjct: 67 EMNGMDLDGRTITVDKA 83
>30099.m001684 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 478
Score = 51.2 bits (121), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 76/194 (39%), Gaps = 46/194 (23%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L + T TL F Y D + + D+ +G+S+G+GF+ F+ + A+ A+
Sbjct: 134 HRKIFVHGLGWDSTAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKAL 193
Query: 198 NDLTGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNP 257
+ K +G+R C A+ G T+ AP N P
Sbjct: 194 EEPQ-KKIGNRMTACQLASMGP---------------------------VPTSTAPANTP 225
Query: 258 --------QYT--TVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRD------KGFGF 301
+YT +Y+ N+ ++ L F G IEE + D KGF
Sbjct: 226 APGQQQVSEYTQRKIYISNVGADLDPQQLTSFFSKFGE--IEEGPLGLDKLTGKPKGFCL 283
Query: 302 VRYSTHAEAALAIQ 315
Y + A A++
Sbjct: 284 FVYKSVESAKKALE 297
>29581.m000256 serine/arginine rich splicing factor, putative
Length = 257
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 44/85 (51%)
Query: 134 DTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDA 193
D + +++ V +++ T LF F Y D + D++TG SRGF FV ++ +A
Sbjct: 11 DITDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPRDRRTGDSRGFAFVRYKYADEA 70
Query: 194 QSAINDLTGKWLGSRQIRCNWATKG 218
Q A+ L G+ + R+I +A G
Sbjct: 71 QKAVERLDGRVVDGREITVQFAKYG 95
>30076.m004440 RNA-binding region-containing protein, putative
Length = 291
Score = 51.2 bits (121), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 50/90 (55%), Gaps = 2/90 (2%)
Query: 130 GQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRN 189
GQ DT+ IFVG L+ E T+ F + +A V+ D+ TGRS+G+GFV+F++
Sbjct: 16 GQYNDTT-FTKIFVGGLAWETQRDTMRRYFEQFGEILEAVVITDKNTGRSKGYGFVTFKD 74
Query: 190 QQDAQSAINDLTGKWLGSRQIRCNWATKGA 219
+ A A + + + R+ CN A+ GA
Sbjct: 75 PEAAIRACQNPS-PVIDGRRANCNLASLGA 103
>29629.m001425 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 348
Score = 50.8 bits (120), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 70/171 (40%), Gaps = 5/171 (2%)
Query: 49 DPSTCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRK----EKSSYGFIHYYDRRSA 104
D ++ +++G + T + F G + +++ + +GFI Y D
Sbjct: 14 DGASPGKIFIGGLAKDTTYATFNKHFGRYGEITDSVIMKDRYTGQPRGFGFITYADPSVV 73
Query: 105 ALAILSLNGRHLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACFSVYPS 164
I + H IK SGQ +D IFVG + VT+ FS Y
Sbjct: 74 DKVIEDTHVIHGKQVEIKRTIPKGSGQSKDFKTK-KIFVGGIPSSVTEDEFKGFFSKYGQ 132
Query: 165 CSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWA 215
+ +++ D +T RSRGFGF+ F +++ +++ + Q+ A
Sbjct: 133 VVEHQIIRDHETNRSRGFGFIIFDSEETVDEMLSNGNMIDMAGTQVEIKKA 183
>29900.m001607 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 398
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 83/177 (46%), Gaps = 14/177 (7%)
Query: 52 TCRSVYVGNIHTQVTEPLLQEVFSSTGLVEGCKLIRKEKSS----YGFIHYYDRRSAALA 107
+ R +++ + ++ T ++ +F++ G +E +I + + +GFI + A +A
Sbjct: 73 SLRKLFIRGLSSETTTETIRNLFNNYGELEEAIVIFDKNTGKSKGFGFITFKHVDGALIA 132
Query: 108 IL----SLNGR----HLFGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFACF 159
+ ++GR L + + +SG D S I+VG++ + L F
Sbjct: 133 LKEPSKKIDGRMTVTQLASAGLSNSSINSSGGGSDVSAR-KIYVGNVPYNIPSERLLGFF 191
Query: 160 SVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTGKWLGSRQIRCNWAT 216
Y + + +D+ TG+S+GF F+ ++ ++ A++AI D K + Q+ C A
Sbjct: 192 LNYGEVEEGPLGFDKSTGKSKGFAFIIYKTEEGAKAAIADPV-KMIDGHQVVCKMAV 247
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 82/198 (41%), Gaps = 35/198 (17%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+F+ LS E T T+ F+ Y +A V++D+ TG+S+GFGF++F++ A A+ +
Sbjct: 77 LFIRGLSSETTTETIRNLFNNYGELEEAIVIFDKNTGKSKGFGFITFKHVDGALIALKEP 136
Query: 201 TGKWLGSRQIRCNWATKGAGXXXXXXXXXXXXVVELTNGTSEEGKDTATNEAPENNPQYT 260
+ K G V +L + ++ + + +
Sbjct: 137 SKKIDGR-----------------------MTVTQLASAGLSNSSINSSGGGSDVSAR-- 171
Query: 261 TVYVGNLAPEVTQLDLHRHFHALGAGVIEEVRVQRDK------GFGFVRYSTHAEAALAI 314
+YVGN+ + L F L G +EE + DK GF F+ Y T A AI
Sbjct: 172 KIYVGNVPYNIPSERLLGFF--LNYGEVEEGPLGFDKSTGKSKGFAFIIYKTEEGAKAAI 229
Query: 315 QMGNTQSILCGKQIKCSW 332
+ ++ G Q+ C
Sbjct: 230 --ADPVKMIDGHQVVCKM 245
>29973.m000409 Eukaryotic translation initiation factor 3 subunit,
putative
Length = 307
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 55/105 (52%), Gaps = 8/105 (7%)
Query: 103 SAALAILSLNGRHL-----FGQPIKVNWAYASGQREDTSGHFNIFVGDLSPEVTDATLFA 157
SAA +I ++N +++ G N + +R D + + V +S ++A L
Sbjct: 179 SAASSITAMNSKYIPPSMRAGAQRSSNDKFNMKRRNDEN---TVRVSCISENTSEADLVD 235
Query: 158 CFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDLTG 202
FS + S ++ D+ TG +RG GFVSF N++DA+ AIN L G
Sbjct: 236 LFSPFGQVSRVFLLTDRHTGLNRGSGFVSFVNKEDAERAINKLDG 280
>29154.m000213 cold-inducible RNA binding protein, putative
Length = 94
Score = 50.1 bits (118), Expect = 2e-06, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 40/68 (58%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
+FVG LS T+ L FS + +AR++ D +T + +GFGFV+F ++ AQ A+ +
Sbjct: 9 LFVGRLSCYTTNQKLEKLFSPFGIVKEARLVLDPRTQKPKGFGFVTFDSESQAQKALKAM 68
Query: 201 TGKWLGSR 208
G+ + R
Sbjct: 69 NGRIVDGR 76
>30006.m000276 Heterogeneous nuclear ribonucleoprotein A1, putative
Length = 462
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 1/81 (1%)
Query: 138 HFNIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI 197
H IFV L + + TL F Y D + + D+ +G+S+G+GF+ F+ + A+ A+
Sbjct: 128 HRKIFVHGLGWDTSAETLTNAFKQYGEIEDCKAVCDKVSGKSKGYGFILFKKRSGARKAL 187
Query: 198 NDLTGKWLGSRQIRCNWATKG 218
+ K +G+R C A+ G
Sbjct: 188 QEPQ-KKIGNRMTACQLASIG 207
>29999.m000207 RNA binding protein, putative
Length = 144
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 39/66 (59%)
Query: 140 NIFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAIND 199
+FV LS TD L FS + DA+V+ D+ +GRS+GFGF+++ ++A+ A
Sbjct: 37 RLFVSGLSRLTTDEKLKEAFSPFGQLVDAKVIIDRASGRSKGFGFITYATIEEAEKAREG 96
Query: 200 LTGKWL 205
+ K+L
Sbjct: 97 MNAKFL 102
>29807.m000475 glycine-rich RNA-binding protein, putative
Length = 218
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 141 IFVGDLSPEVTDATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAINDL 200
I+VG L T+ T+ F Y S +++ D T R + + FV+FRN + AIND+
Sbjct: 9 IYVGSLPYSATEDTIRRVFGPYGSIVSVKIINDHGT-RGKCYCFVTFRNPRSVSDAINDM 67
Query: 201 TGKWLGSRQIRCNWATKGAG 220
GK + R +R N T G
Sbjct: 68 NGKTIDGRVVRVNGVTTRGG 87
>29608.m000212 Heterogeneous nuclear ribonucleoprotein 27C, putative
Length = 484
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 83/177 (46%), Gaps = 34/177 (19%)
Query: 56 VYVGNIHTQVTEPLLQEVFSSTG-LVEGCKLIRKEKSS-----YGFIHYYDRRSAALAIL 109
+++G I E L+E F S G +VE +I K++++ +GF+ + D A I+
Sbjct: 8 LFIGGISWDTNEERLKEYFGSFGEVVE--AVIMKDRTTGRARGFGFVVFADAAVAERVIM 65
Query: 110 SLNGRHLFGQPIKVNWAYASGQRED---------TSGHFN--------IFVGDLSPEVTD 152
++ G+ ++ A R+D +S H + IFVG L+ VT+
Sbjct: 66 EK--HNIDGRMVEAKKAVP---RDDQNILNRSTGSSIHGSPGPGRTRKIFVGGLASTVTE 120
Query: 153 ATLFACFSVYPSCSDARVMWDQKTGRSRGFGFVSFRNQQDAQSAI----NDLTGKWL 205
F Y + +D VM+D T R RGFGF+++ +++ + ++L GK +
Sbjct: 121 TDFRKYFEQYGTITDVVVMYDHNTQRPRGFGFITYDSEEAVDKVLMKTFHELNGKMV 177