Jatropha Genome Database

JcCA0029581.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.30 - phase: 2 /partial
         (60 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30055.m001550 DNA binding protein, putative                           121   8e-29
29908.m005962 Transcription factor TGA7, putative                      55   9e-09
28837.m000025 hypothetical protein                                     53   3e-08
28883.m000741 Transcription factor HBP-1b(c1), putative                50   2e-07
30131.m007163 Transcription factor HBP-1b(c1), putative                50   2e-07

>30055.m001550 DNA binding protein, putative
          Length = 443

 Score =  121 bits (303), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 56/60 (93%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRESMMGDENSCQTTSDLQMVQPPQNHFTNF 60
           TVRQ ARCFLVIGEYYGRLRALSSLWASRPRESMMGD+NSCQ T+DLQMVQ  QNHFTNF
Sbjct: 384 TVRQGARCFLVIGEYYGRLRALSSLWASRPRESMMGDDNSCQITTDLQMVQQSQNHFTNF 443


>29908.m005962 Transcription factor TGA7, putative
          Length = 361

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 24/32 (75%), Positives = 27/32 (84%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAAR  L +GEY+ RLRALSSLWA+RPRE
Sbjct: 328 TTRQAARGLLALGEYFHRLRALSSLWAARPRE 359


>28837.m000025 hypothetical protein
          Length = 131

 Score = 53.1 bits (126), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 23/32 (71%), Positives = 26/32 (81%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAAR  L +GEY+ RLRALSSLW +RPRE
Sbjct: 98  TTRQAARGLLALGEYFQRLRALSSLWVTRPRE 129


>28883.m000741 Transcription factor HBP-1b(c1), putative
          Length = 476

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 22/32 (68%), Positives = 25/32 (78%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQAAR  LVI +Y  RLRALSSLW +RPR+
Sbjct: 445 TTRQAARALLVINDYTSRLRALSSLWLARPRD 476


>30131.m007163 Transcription factor HBP-1b(c1), putative
          Length = 463

 Score = 50.1 bits (118), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 21/32 (65%), Positives = 25/32 (78%)

Query: 1   TVRQAARCFLVIGEYYGRLRALSSLWASRPRE 32
           T RQ+AR  L I +Y+ RLRALSSLW +RPRE
Sbjct: 432 TTRQSARALLAIHDYFSRLRALSSLWLARPRE 463