Jatropha Genome Database

JcCA0029581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.20 - phase: 0 /pseudo/partial
         (212 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30063.m001418 conserved hypothetical protein                          341   2e-94

>30063.m001418 conserved hypothetical protein
          Length = 303

 Score =  341 bits (874), Expect = 2e-94,   Method: Compositional matrix adjust.
 Identities = 169/214 (78%), Positives = 182/214 (85%), Gaps = 5/214 (2%)

Query: 1   MEMFILP-YSSGAHGG-GYCXXXXXXXXXXXHGCKIVIVMGKSKKPRSSFPKGSDPAPPR 58
           M+   LP Y    HG  GYC              KIVIVMGK+KKPRS  PK  +PAPPR
Sbjct: 1   MKTLRLPDYPCMGHGSSGYCSYSRSNRNTYY---KIVIVMGKNKKPRSPSPKDPEPAPPR 57

Query: 59  ITSNIKQNLQFLKLWKEFQKRKSSTPKPATSYRRKKVEKEELPEDTELYRDPTLSLYYTN 118
           ITSN+KQNLQFLKLWKEFQKRKSSTPKPATSYR+KKV+KE+LPEDTELYRDPTLSLYYTN
Sbjct: 58  ITSNLKQNLQFLKLWKEFQKRKSSTPKPATSYRKKKVQKEDLPEDTELYRDPTLSLYYTN 117

Query: 119 QILDNAVPVLLVDGYNVCGYWAKLKKHFMNGRLDIARQKLIDELVTFSMLRDVKVVVVFD 178
           Q++D+AVPVLLVDGYNVCGYW KLKKHFMNGRLDIARQKLIDEL+TFSMLR+VKVV VFD
Sbjct: 118 QVIDDAVPVLLVDGYNVCGYWPKLKKHFMNGRLDIARQKLIDELITFSMLREVKVVAVFD 177

Query: 179 AMMSGLPTHKETFAGVDVVFSGESCADAWIXKEV 212
           AMMSGLPTHKETF G+DVVFSGESCADAWI KEV
Sbjct: 178 AMMSGLPTHKETFIGIDVVFSGESCADAWIEKEV 211