Jatropha Genome Database

JcCA0029581.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029581.10 - phase: 1 /TE/partial
         (240 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011080 conserved hypothetical protein                           79   1e-15

>30190.m011080 conserved hypothetical protein
          Length = 101

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 51/89 (57%), Gaps = 3/89 (3%)

Query: 6  IIPFSSTPIFVGENYQLWAVKMKAYLQAYDLREHVETEKEIPPLPSNLTMVQIKNHSEEX 65
          IIP    PI  G+NY  WAVKM+ YLQA+DL   VE + E  P   + T  +I++ + E 
Sbjct: 11 IIP---PPILTGDNYSKWAVKMQCYLQAFDLWNFVEADTEPTPFTDDATHAKIRHFNAEK 67

Query: 66 XXXXXXXXCLHSSVSDIIFTSIMTCETTK 94
                  C+HS+VSD+IF  I+ C T K
Sbjct: 68 ARKFKAKTCIHSAVSDVIFDKIICCNTPK 96