Jatropha Genome Database

JcCA0029471.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029471.10 + phase: 1 /partial
         (110 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29933.m001400 conserved hypothetical protein                          158   4e-40
29842.m003546 conserved hypothetical protein                           91   2e-19
30198.m000850 conserved hypothetical protein                           47   2e-06

>29933.m001400 conserved hypothetical protein
          Length = 246

 Score =  158 bits (400), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 76/99 (76%), Positives = 79/99 (79%)

Query: 12  QEGLEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETE 71
           QEGLE EITRR            KDPERRGWHP+TYKFSDATP LIK+IKDIDNIYYETE
Sbjct: 141 QEGLEREITRRSLTHSSWDLSSSKDPERRGWHPLTYKFSDATPMLIKSIKDIDNIYYETE 200

Query: 72  YRKEWCSSKGKPSTCFLFARKFTRPAALRLLNMVNFKCT 110
           YR+EWCSSKGKPS CFLFARKFTRPAALRLLNM     T
Sbjct: 201 YRREWCSSKGKPSKCFLFARKFTRPAALRLLNMSVLGAT 239


>29842.m003546 conserved hypothetical protein
          Length = 405

 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 1/89 (1%)

Query: 15  LEGEITRRXXXXXXXXXXXXKDPERRGWHPVTYKFSDATPTLIKNIKDIDNIYYETEYRK 74
           LEGE+ RR            +  E +GWHP+T+ + +A P  I+ IK I+++YYETEYR 
Sbjct: 301 LEGELERRTLTYTVWNLSVTRM-ESKGWHPMTFTYGNAGPQKIREIKAINHVYYETEYRT 359

Query: 75  EWCSSKGKPSTCFLFARKFTRPAALRLLN 103
           EWC +      CFLFARKF+R AA+RLL+
Sbjct: 360 EWCHTNSTSVPCFLFARKFSRGAAMRLLS 388


>30198.m000850 conserved hypothetical protein
          Length = 365

 Score = 47.0 bits (110), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 39/74 (52%), Gaps = 5/74 (6%)

Query: 36  DPERRGWHPVTYKFSDATPTLIKNIKDID-NIYYETEYRKEW----CSSKGKPSTCFLFA 90
           D   R WHP +Y+  D T  L+KNI  ID +I+  ++ +KE     C   G    C+LFA
Sbjct: 285 DWSERKWHPKSYRAQDITYELLKNITSIDQSIHVTSDEKKEVQIQPCLWNGIRRPCYLFA 344

Query: 91  RKFTRPAALRLLNM 104
           RKF   A   LL +
Sbjct: 345 RKFYPEAIDNLLQL 358