Jatropha Genome Database

JcCA0029051.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0029051.30 + phase: 0 /partial
         (354 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30169.m006435 origin recognition complex subunit, putative            345   2e-95
30169.m006272 conserved hypothetical protein                           55   4e-08
29840.m000626 chromodomain helicase DNA binding protein, putative      53   2e-07
29822.m003351 DNA binding protein, putative                            51   7e-07
30190.m011218 transcription factor, putative                           51   1e-06
29631.m001003 DNA binding protein, putative                            49   3e-06

>30169.m006435 origin recognition complex subunit, putative
          Length = 844

 Score =  345 bits (885), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 181/302 (59%), Positives = 216/302 (71%), Gaps = 15/302 (4%)

Query: 60  ADSPRITLRSPSKKPKQTPPLSSICLTPRTPQVVDPPXXXXXXXXXXXDQITTPQKCASQ 119
           AD+P+   +SP+ K K   P S   +TP+TP  +DPP           DQI TP     Q
Sbjct: 3   ADTPKKLFQSPAIKSKH--PGS---VTPQTPLPIDPPRRSSRRLSLKLDQIATPHTPIPQ 57

Query: 120 LKKPIEDSLKIRRNSRKNGSIKTPESKRDTESTXXXXXXXX--XXNIEVSFSPVSPDQLD 177
           +++P++D ++     +++   ++ E++R+ ES             ++EVSFSP+SPDQL+
Sbjct: 58  IEEPVKDLVEKSSKCQRDLRTESLETQRENESAKTPKTKKSSKVVDVEVSFSPISPDQLE 117

Query: 178 TXXXXXXXXXXX---XMMTRAMASKNAK-SEQKGN----RKRVYYKKVVYDGGEFEVGDD 229
           T               ++TRAMASK  K  EQK N    +KRVYYKKVVYDGGEFEVGDD
Sbjct: 118 TKKRKRSEEKEKDRKVIITRAMASKTTKKGEQKTNNDKIKKRVYYKKVVYDGGEFEVGDD 177

Query: 230 VYVKRREDASSDDEDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWI 289
           VYVKRR+DASSD +DPEVEECRVCFKAGKA+M+ECDDCLGGFHL+CLKPPLK VPEGDWI
Sbjct: 178 VYVKRRDDASSDIDDPEVEECRVCFKAGKAIMIECDDCLGGFHLRCLKPPLKVVPEGDWI 237

Query: 290 CGFCEARKLGKEVELPKSPEGKKRSRTLREKLLSSDLWAVRIESLWKEVDGSYWFKGRWY 349
           CGFCEARKLGKEV+LP  PEGKKR RTLREKLLSSDLWA RIESLWKEVDGSYW KGRWY
Sbjct: 238 CGFCEARKLGKEVKLPTPPEGKKRVRTLREKLLSSDLWAARIESLWKEVDGSYWCKGRWY 297

Query: 350 II 351
           II
Sbjct: 298 II 299


>30169.m006272 conserved hypothetical protein
          Length = 602

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 30/51 (58%), Gaps = 2/51 (3%)

Query: 243 EDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
           +D    EC +C   G   +L CD C G +HL+CL PPL+ VP G+W C  C
Sbjct: 57  DDGHYYECVICDNGGD--LLCCDTCPGTYHLQCLTPPLELVPSGNWQCENC 105


>29840.m000626 chromodomain helicase DNA binding protein, putative
          Length = 2257

 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 47/100 (47%), Gaps = 17/100 (17%)

Query: 209 RKRVYYKKVVYDGGEFEVG------DDVYVKRRE------DASSD---DEDPEVEECRVC 253
           RK++ Y +V+ +G E ++       +    KRR       D SS      D    EC +C
Sbjct: 22  RKKILYGRVLANGKEEKLAPLESPRNASAAKRRSKCELGSDLSSSKKKGNDGYYYECVIC 81

Query: 254 FKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
              G   +L CD C   +HL+CL PPLK +P G W C  C
Sbjct: 82  DLGGN--LLCCDSCPRVYHLQCLDPPLKRIPMGKWQCPKC 119


>29822.m003351 DNA binding protein, putative
          Length = 2145

 Score = 51.2 bits (121), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 4/99 (4%)

Query: 250  CRVC-FKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFCEARKLGKEVELPKSP 308
            C+VC F      +L CD C   +H  CL PPL  +PEG+W C  C + ++ +E  +    
Sbjct: 1223 CKVCGFDKDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVSVRMVQEASVSTQV 1282

Query: 309  EGKKRSRTLREKLLSSDLWA-VRIESLWKEVDGSYWFKG 346
             G+   +  + ++    L   V + S  +E D  YW  G
Sbjct: 1283 IGQNSCKKYQGEMTRIYLETLVHLASAMEEKD--YWDFG 1319


>30190.m011218 transcription factor, putative
          Length = 1509

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 241 DDEDPEVEECRVCFKAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
           ++ D   E+CR        VML CD C  G+H+ CL PPLK++P G+W C  C
Sbjct: 246 EELDQICEQCRSGLHG--EVMLLCDRCNKGWHIYCLSPPLKQIPPGNWYCFEC 296


>29631.m001003 DNA binding protein, putative
          Length = 1794

 Score = 49.3 bits (116), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 250 CRVCF--KAGKAVMLECDDCLGGFHLKCLKPPLKEVPEGDWICGFC 293
           C+VC   K    V+L CD C  G+H  CL PPL  +PEG+W C  C
Sbjct: 919 CKVCGVDKDDDNVLL-CDKCDSGYHTYCLNPPLARIPEGNWYCPSC 963