Jatropha Genome Database

JcCA0028741.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028741.10 - phase: 0 
         (193 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28327.m000358 Chorismate synthase, chloroplast precursor, putative    322   6e-89

>28327.m000358 Chorismate synthase, chloroplast precursor, putative
          Length = 435

 Score =  322 bits (825), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 154/193 (79%), Positives = 170/193 (88%)

Query: 1   MIAAVDAIRVKGDSIGGVVTCIVRNAPCGLGSPVFDKLEAEFAKALLSLPASKGFEVGSG 60
           MIAA+D IRV+GDS+GGVVTCIVRN P GLGSPVFDKLEAE AKA++SLPA+KGFE GSG
Sbjct: 243 MIAAIDKIRVRGDSVGGVVTCIVRNVPRGLGSPVFDKLEAELAKAVMSLPATKGFEFGSG 302

Query: 61  FAGTFLTGSEHNDEFYLDEHGKIRTRRNRSGGIQEGISNGEIIKMRVAFKPTATISKKQN 120
           FAGTFLTGSEHNDEFY++EHGKIRTR NRSGGIQ GISNGE I MR+AFKPT+TI KKQ+
Sbjct: 303 FAGTFLTGSEHNDEFYMEEHGKIRTRTNRSGGIQGGISNGETIYMRIAFKPTSTIGKKQH 362

Query: 121 TVTRDRMEIELIACGRHDPCVVPRAVPMVEAMVALVLVDQLMAHHAQCGLFPINPMLQEP 180
           TVTRD++E ELIA GRHDPCVVPRAVPMVEAMVALVLVDQLMA +AQC +FPINP LQEP
Sbjct: 363 TVTRDKVETELIARGRHDPCVVPRAVPMVEAMVALVLVDQLMAQYAQCYMFPINPELQEP 422

Query: 181 LNEASIEPDNMAL 193
           L     E  NM +
Sbjct: 423 LKLPRAESVNMTI 435