Jatropha Genome Database

JcCA0028681.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0028681.10 - phase: 0 /partial
         (468 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30041.m000240 isopropylmalate synthase, putative                      770   0.0  

>30041.m000240 isopropylmalate synthase, putative
          Length = 632

 Score =  770 bits (1989), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 382/471 (81%), Positives = 405/471 (85%), Gaps = 9/471 (1%)

Query: 1   MATFISTT-PKLSVSQITSRSS--NLSPPLLHFTSKWSDXXXXXXXXXXXXXXLLRTTIS 57
           MA+  +TT PK S+SQITS+ S   +S  LLHFT                         S
Sbjct: 1   MASISATTAPKFSISQITSKPSPPRISHSLLHFTPTRCRFFSNSKFSVSFPSN------S 54

Query: 58  CSQXXXXXXXXXXXXXXXXXXEYIPNHIPDPFYVRVFDTTLRDGEQSPGATLTSKEKLDI 117
             +                  EYIP+HIPDP YVR+FDTTLRDGEQSPGATLTSKEKLDI
Sbjct: 55  RFKSSTAISCSSSAAPLSRRPEYIPSHIPDPSYVRIFDTTLRDGEQSPGATLTSKEKLDI 114

Query: 118 ARHLSKLGVDIIEAGFPAASNDDFEAVKTIAKEVGNAVDDEGYVPVICGLSRCNEKDIKT 177
           AR LSKLGVDIIEAGFPAAS DDFEAVKTIAKEVGNAVD++GYVPVICGLSRCNEKDI+T
Sbjct: 115 ARQLSKLGVDIIEAGFPAASKDDFEAVKTIAKEVGNAVDEDGYVPVICGLSRCNEKDIRT 174

Query: 178 AWEAVKYAKRPRIHTFIATSEIHMQYKLRKSKEEVVEIATNMVKFARSLGCDDVEFSPED 237
           AWEAVKYAKRPRIHTFIATS IHM+YKLRKSKEEVVEIA +MVKFARSLGCDDVEFSPED
Sbjct: 175 AWEAVKYAKRPRIHTFIATSAIHMEYKLRKSKEEVVEIARSMVKFARSLGCDDVEFSPED 234

Query: 238 AGRSDREFLYHILGEVIKAGATTLNIPDTVGITLPSEFGQLIADIRANTPGIENVIISTH 297
           AGRSDREFLYHILGEVIKAGATTLNIPDTVGITLPSEFGQLIADI+ANTPGI+ VIISTH
Sbjct: 235 AGRSDREFLYHILGEVIKAGATTLNIPDTVGITLPSEFGQLIADIKANTPGIDKVIISTH 294

Query: 298 CQNDLGLSTANTLAGTYAGARQVEVTVNGIGERAGNASLEEVVMAIKCRGEHVLGGLYTG 357
           CQNDLGLSTANTLAG YAGARQVEVT+NGIGERAGNASLEEVVMAIKCRGEH+LGGLYTG
Sbjct: 295 CQNDLGLSTANTLAGAYAGARQVEVTINGIGERAGNASLEEVVMAIKCRGEHILGGLYTG 354

Query: 358 INSKHITMASKMVEEYTGLHVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIMSPEDIG 417
           IN + ITMASKMVEEYTGLH+QPHKAIVGANAFAHESGIHQDGMLKHKGTYEI+SPEDIG
Sbjct: 355 INPRQITMASKMVEEYTGLHLQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIISPEDIG 414

Query: 418 LERANDAGIVLGKLSGRHALKDRLKELGYELSDEQLGNIFWRFKSVAENKK 468
           LER+NDAGIVLGKLSGRHALKDRLKELGYEL+DEQLG IFWRFK+VAE KK
Sbjct: 415 LERSNDAGIVLGKLSGRHALKDRLKELGYELNDEQLGTIFWRFKAVAETKK 465