Jatropha Genome Database
- JcCA0028191.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0028191.10 - phase: 1 /pseudo/partial
(322 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29269.m000250 LIGULELESS1 protein, putative 386 e-108
30174.m009082 LIGULELESS1 protein, putative 62 3e-10
30138.m003942 LIGULELESS1 protein, putative 62 5e-10
30170.m014245 Squamosa promoter-binding protein, putative 61 6e-10
30076.m004574 conserved hypothetical protein 61 9e-10
29929.m004641 LIGULELESS1 protein, putative 60 1e-09
29889.m003388 Squamosa promoter-binding protein, putative 59 2e-09
29929.m004627 conserved hypothetical protein 59 2e-09
30147.m014478 Squamosa promoter-binding protein, putative 59 3e-09
28211.m000132 Squamosa promoter-binding protein, putative 57 9e-09
29983.m003158 Squamosa promoter-binding protein, putative 57 9e-09
30174.m008805 Squamosa promoter-binding protein, putative 57 2e-08
30190.m011329 Squamosa promoter-binding protein, putative 54 7e-08
29726.m003959 Squamosa promoter-binding protein, putative 53 2e-07
30174.m008803 LIGULELESS1 protein, putative 50 1e-06
>29269.m000250 LIGULELESS1 protein, putative
Length = 349
Score = 386 bits (991), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/257 (78%), Positives = 217/257 (84%), Gaps = 5/257 (1%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS+LSSRY+RLSST++D+S+R GGFLVDF
Sbjct: 94 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSLLSSRYSRLSSTVFDNSSRAGGFLVDF 153
Query: 130 SAYSRLSGRDAWPTGRSSERSPVNQTASTGRSIPHPWQNSSQNPPSNLYLQXXXXXXXXX 189
SAY RLS RDAWP+ R SER P N T GRSIP+PWQ SSQNPPSNLYLQ
Sbjct: 154 SAYPRLSARDAWPSARPSERVPGNHTTGAGRSIPNPWQTSSQNPPSNLYLQGSASGTGFS 213
Query: 190 XXXXIPSGECFTGVGIADSSCALSLLSNQPWGSRNQEPGLG----VNTQGAPMAQSTAPH 245
PSGECFTGV IADSSCALSLLSNQPWGSRNQ GLG V+ QGAP+AQST PH
Sbjct: 214 SSEN-PSGECFTGVSIADSSCALSLLSNQPWGSRNQASGLGVKNLVDPQGAPLAQSTNPH 272
Query: 246 GAAVNQYSNPSWGFKGSEASSSSHEMCPDLGLGQISQPLNSHFSGELELSQQNRRQYMEL 305
GAAVNQY NPSWGFKGSEA SSSHEMCPDLGLGQISQP N HF+GELELSQQNRRQYMEL
Sbjct: 273 GAAVNQYPNPSWGFKGSEAGSSSHEMCPDLGLGQISQPPNGHFAGELELSQQNRRQYMEL 332
Query: 306 DHSRAFDSSTHHIHWSL 322
DHSRA+DSST H++WSL
Sbjct: 333 DHSRAYDSSTQHMNWSL 349
>30174.m009082 LIGULELESS1 protein, putative
Length = 512
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/42 (71%), Positives = 34/42 (80%), Gaps = 1/42 (2%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRL 111
RFH L EFD GKRSCR+RLAGHNERRRKP G+ LS R ++L
Sbjct: 218 RFHLLVEFDDGKRSCRKRLAGHNERRRKPQFGA-LSGRPHKL 258
>30138.m003942 LIGULELESS1 protein, putative
Length = 557
Score = 61.6 bits (148), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 26/32 (81%), Positives = 27/32 (84%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPG 101
RFH L EFD GKRSCR+RLAGHNERRRKP G
Sbjct: 222 RFHLLAEFDDGKRSCRKRLAGHNERRRKPQVG 253
>30170.m014245 Squamosa promoter-binding protein, putative
Length = 1073
Score = 61.2 bits (147), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/109 (39%), Positives = 58/109 (53%), Gaps = 13/109 (11%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRY---NRLSSTLYDSSNRGGGFL 126
RFH L EFD+GKRSCRRRLAGHN RRRK P V S NR D+++ +
Sbjct: 195 RFHPLSEFDEGKRSCRRRLAGHNRRRRKTQPEDVTSRLLLPGNR------DTASSANLDI 248
Query: 127 VD-FSAYSRLSGRDAWPTGRSS---ERSPVNQTASTGRSIPHPWQNSSQ 171
V+ +A +R G+ A +S +R + Q S S+P P ++Q
Sbjct: 249 VNLLTALARTQGKHADKRINASSMPDRDQLIQILSKINSLPLPMDLAAQ 297
>30076.m004574 conserved hypothetical protein
Length = 1012
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 26/34 (76%), Positives = 29/34 (85%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH L EFD+GKRSCRRRLAGHN+RRRK P +V
Sbjct: 203 RFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPDTV 236
>29929.m004641 LIGULELESS1 protein, putative
Length = 483
Score = 60.1 bits (144), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYD 117
RFH L EFD+ KRSCRRRL+ HN RRRKP P S+ + RLSS+ YD
Sbjct: 234 RFHGLSEFDEKKRSCRRRLSDHNARRRKPQPESIQMNSA-RLSSSSYD 280
>29889.m003388 Squamosa promoter-binding protein, putative
Length = 1026
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 26/36 (72%), Positives = 30/36 (83%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLS 105
RFH L EFD+GKRSCRRRLAGHN RRRK P +V++
Sbjct: 197 RFHVLQEFDEGKRSCRRRLAGHNRRRRKTHPENVVN 232
>29929.m004627 conserved hypothetical protein
Length = 404
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 28/34 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH L EFD+GKRSCR+RL GHN RRRKP P S+
Sbjct: 138 RFHSLVEFDEGKRSCRKRLDGHNRRRRKPQPDSM 171
>30147.m014478 Squamosa promoter-binding protein, putative
Length = 382
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 8/62 (12%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSVLSSRYNRLSSTLYDSSNRGGGFLVDF 129
RFH L EFD+GKRSCR+RL GHN RRRKP P + +R +S L SN G L+ F
Sbjct: 141 RFHSLEEFDEGKRSCRKRLDGHNRRRRKPQPDLL-----SRPASFL---SNYKGNHLLPF 192
Query: 130 SA 131
S+
Sbjct: 193 SS 194
>28211.m000132 Squamosa promoter-binding protein, putative
Length = 198
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 27/33 (81%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS 102
RFH+L EFD+ KRSCRRRLAGHNERRRK S
Sbjct: 119 RFHELVEFDEAKRSCRRRLAGHNERRRKSSAES 151
>29983.m003158 Squamosa promoter-binding protein, putative
Length = 198
Score = 57.4 bits (137), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 25/33 (75%), Positives = 27/33 (81%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS 102
RFH+L EFD+ KRSCRRRLAGHNERRRK S
Sbjct: 122 RFHELIEFDETKRSCRRRLAGHNERRRKNTTES 154
>30174.m008805 Squamosa promoter-binding protein, putative
Length = 262
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/34 (73%), Positives = 26/34 (76%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGSV 103
RFH + EFD KRSCRRRLAGHNERRRK SV
Sbjct: 214 RFHVVSEFDDAKRSCRRRLAGHNERRRKSAHDSV 247
>30190.m011329 Squamosa promoter-binding protein, putative
Length = 141
Score = 54.3 bits (129), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 23/28 (82%), Positives = 25/28 (89%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH++ EFD KRSCRRRLAGHNERRRK
Sbjct: 103 RFHEVSEFDDTKRSCRRRLAGHNERRRK 130
>29726.m003959 Squamosa promoter-binding protein, putative
Length = 795
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRKPPPGS 102
+FH LP+FD+GKRSCRR+L HN+RRR+ P S
Sbjct: 193 KFHLLPDFDEGKRSCRRKLERHNDRRRRKPHDS 225
>30174.m008803 LIGULELESS1 protein, putative
Length = 302
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/28 (78%), Positives = 23/28 (82%)
Query: 70 RFHQLPEFDQGKRSCRRRLAGHNERRRK 97
RFH L EFD GKRSCR+RLA HN RRRK
Sbjct: 197 RFHLLSEFDNGKRSCRKRLADHNRRRRK 224