Jatropha Genome Database

JcCA0025111.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0025111.30 + phase: 0 
         (157 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008936 mads box protein, putative                              149   6e-37
30147.m014133 mads box protein, putative                               92   1e-19
30190.m011098 mads box protein, putative                               82   8e-17

>30174.m008936 mads box protein, putative
          Length = 157

 Score =  149 bits (375), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 87/158 (55%), Positives = 102/158 (64%), Gaps = 2/158 (1%)

Query: 1   MQGTIERFRKHVKDTQVTKKITDENMQH-LKTEAASMVKKIEHLETAKRKXXXXXXXXXX 59
           MQ TIER+R+HVK+ Q  KK TDENMQH LK+EA +++KKIE LE +KRK          
Sbjct: 1   MQDTIERYRRHVKEHQTNKKPTDENMQHQLKSEAGNLMKKIELLEVSKRKLLGQGLGSCN 60

Query: 60  XXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFK 119
                       +SVSSIRARKNQVFKEQIE+L+EKE+ LAAENARLSEKCG+Q L G K
Sbjct: 61  LEELQQIEQQLEKSVSSIRARKNQVFKEQIEQLKEKEKQLAAENARLSEKCGVQALPGLK 120

Query: 120 QLGEQNMXXXXXXXXXXXXXXLFIGLPETRNKRCRPRN 157
           +  E+N               LFIG PETR KR  PRN
Sbjct: 121 E-QEENRPYEEGSPVSDVETELFIGPPETRTKRFPPRN 157


>30147.m014133 mads box protein, putative
          Length = 213

 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/149 (40%), Positives = 79/149 (53%), Gaps = 2/149 (1%)

Query: 1   MQGTIERFRKHVKDTQVTKKITDE-NMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXX 59
           MQ TIER+RKH K+ Q    +  E ++Q L  E+A++VKKIE LE ++RK          
Sbjct: 62  MQKTIERYRKHAKEVQAAGSVAKEQHVQELTEESAALVKKIEELEISQRKLLGQGLSSCS 121

Query: 60  XXXXXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGFK 119
                       RS+S+IR+RK Q+FKEQ+E+L+ KERLL  EN RL EKC     Q   
Sbjct: 122 IEELQEIHSQLERSLSNIRSRKVQLFKEQMEQLKAKERLLLEENIRLREKCAENHWQHPT 181

Query: 120 QLGE-QNMXXXXXXXXXXXXXXLFIGLPE 147
           Q  E +                LFIGLPE
Sbjct: 182 QRKEIKTYLNSSSKKKSEVETELFIGLPE 210


>30190.m011098 mads box protein, putative
          Length = 154

 Score = 82.4 bits (202), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 54/150 (36%), Positives = 81/150 (54%), Gaps = 12/150 (8%)

Query: 4   TIERFRKHVKDTQVTKKITDE-NMQHLKTEAASMVKKIEHLETAKRKXXXXXXXXXXXXX 62
           TIER++K  KD  ++ K   E   QH+K +  S+ KKIE LE +KRK             
Sbjct: 8   TIERYQKKAKDLGISIKTVQECTSQHMKEDTFSLAKKIELLEVSKRKLLGDGLEPCSVDE 67

Query: 63  XXXXXXXXGRSVSSIRARKNQVFKEQIERLQEKERLLAAENARLSEKCGIQPLQGF---K 119
                    RS++ IR RKNQ+F E+IE+L+E+E++L  EN +L +KCG++P++     +
Sbjct: 68  LQQLENQLERSLTRIRTRKNQLFGEKIEKLREEEKILMEENTKLRKKCGMKPMELTTKKQ 127

Query: 120 QLGEQNMXXXXXXXXXXXXXXLFIGLPETR 149
           Q+ ++                LFIG PETR
Sbjct: 128 QIADRE--------SMEVETELFIGPPETR 149