Jatropha Genome Database

JcCA0025111.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0025111.20 + phase: 0 
         (61 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30147.m014133 mads box protein, putative                              108   7e-25
30174.m008934 mads box protein, putative                               99   3e-22
30138.m003939 mads box protein, putative                               93   2e-20
29838.m001690 mads box protein, putative                               91   1e-19
29804.m001536 mads box protein, putative                               91   1e-19
29596.m000699 mads box protein, putative                               89   3e-19
30170.m013776 mads box protein, putative                               88   7e-19
29908.m005982 mads box protein, putative                               88   9e-19
29907.m000663 mads box protein, putative                               84   1e-17
29648.m001978 mads box protein, putative                               78   8e-16
29782.m000119 Floral homeotic protein DEFICIENS, putative              75   7e-15
30221.m002218 mads box protein, putative                               74   1e-14
30138.m004061 mads box protein, putative                               72   7e-14
29693.m002039 mads box protein, putative                               70   2e-13
28830.m000229 mads box protein, putative                               67   2e-12
30099.m001672 mads box protein, putative                               67   2e-12
29693.m002042 mads box protein, putative                               67   3e-12
28348.m000077 mads box protein, putative                               64   2e-11
27866.m000233 mads box protein, putative                               64   2e-11
29813.m001508 mads box protein, putative                               63   3e-11
29693.m002041 mads box protein, putative                               62   4e-11
29613.m000367 mads box protein, putative                               62   7e-11
30099.m001671 mads box protein, putative                               59   3e-10
29838.m001672 mads box protein, putative                               59   6e-10
29739.m003627 mads box protein, putative                               59   6e-10
27893.m000228 mads box protein, putative                               57   2e-09
29912.m005524 mads box protein, putative                               55   9e-09
28180.m000391 mads box protein, putative                               52   6e-08
30190.m010925 conserved hypothetical protein                           50   3e-07
29653.m000299 mads box protein, putative                               49   4e-07

>30147.m014133 mads box protein, putative
          Length = 213

 Score =  108 bits (269), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 50/60 (83%), Positives = 57/60 (95%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          MVRGK QMRRIENATSRQVTFSKRRNGLLKKA+ELSVLCDAEVA+I+FS +G+L EF+S+
Sbjct: 1  MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLSEFASN 60


>30174.m008934 mads box protein, putative
          Length = 244

 Score = 99.4 bits (246), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 45/60 (75%), Positives = 54/60 (90%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVALI+FS RGKLYEF ++
Sbjct: 1  MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGNA 60


>30138.m003939 mads box protein, putative
          Length = 244

 Score = 93.2 bits (230), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 43/60 (71%), Positives = 52/60 (86%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M RG+ Q++RIEN  +RQVTFSKRR GLLKKA E+SVLCDAEVALIVFS +GKL+E+S+ 
Sbjct: 1  MGRGRVQLKRIENKINRQVTFSKRRAGLLKKAHEISVLCDAEVALIVFSTKGKLFEYSTD 60


>29838.m001690 mads box protein, putative
          Length = 61

 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 41/61 (67%), Positives = 52/61 (85%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M R K Q+++I+N T+RQVTFSKRR GL KKA+ELS LCDAE+AL+VFS  GKL+E++SS
Sbjct: 1  MTRQKIQIKKIDNITARQVTFSKRRRGLFKKAYELSTLCDAEIALLVFSATGKLFEYASS 60

Query: 61 R 61
          R
Sbjct: 61 R 61


>29804.m001536 mads box protein, putative
          Length = 266

 Score = 90.9 bits (224), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/60 (70%), Positives = 52/60 (86%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M RGK  +RRI+N+TSRQVTFSKRRNGLLKKA ELS+LCDAEV +I+FS   KLY+++S+
Sbjct: 28 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGVIIFSSTSKLYDYAST 87


>29596.m000699 mads box protein, putative
          Length = 262

 Score = 89.4 bits (220), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/60 (73%), Positives = 53/60 (88%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M RGK  +RRI+N+TSRQVTFSKRRNGLLKKA EL++LCDAEV +++FS  GKLY+FSSS
Sbjct: 1  MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTGKLYDFSSS 60


>30170.m013776 mads box protein, putative
          Length = 230

 Score = 88.2 bits (217), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 50/58 (86%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFS 58
          M R K Q++RIEN T+RQVTFSKRRNGL+KKA+ELSVLCD +VALI+FSP G+L  FS
Sbjct: 1  MGRVKLQIKRIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRLSLFS 58


>29908.m005982 mads box protein, putative
          Length = 347

 Score = 87.8 bits (216), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSSS 60
          M R K +++RIEN T+RQVTFSKRRNGL+KKA+ELS+LCD ++ALI+FSP G+L  FS  
Sbjct: 1  MGRVKLEIKRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFSGR 60

Query: 61 R 61
          +
Sbjct: 61 K 61


>29907.m000663 mads box protein, putative
          Length = 205

 Score = 84.3 bits (207), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/59 (67%), Positives = 47/59 (79%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
          M RGK QM+RIEN   RQVTF KRR+GLLKKA ELSVLCDAE+ L +FS  GKLY+ ++
Sbjct: 1  MARGKVQMKRIENPVHRQVTFCKRRSGLLKKAKELSVLCDAEIGLFIFSAHGKLYDLAT 59


>29648.m001978 mads box protein, putative
          Length = 234

 Score = 78.2 bits (191), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/59 (59%), Positives = 53/59 (89%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
          M RG+ +++RIEN+++RQVT+SKRRNG++KKA E++VLCDAEV+LI+F+  GK++E+ S
Sbjct: 1  MGRGRIEIKRIENSSNRQVTYSKRRNGIIKKAKEITVLCDAEVSLIIFASSGKMHEYCS 59


>29782.m000119 Floral homeotic protein DEFICIENS, putative
          Length = 235

 Score = 75.1 bits (183), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 38/60 (63%), Positives = 50/60 (83%), Gaps = 1/60 (1%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRG-KLYEFSS 59
          M RGK ++++IEN T+RQVT+SKRRNG+ KKA EL+VLCDA+V+LI+FS  G K +EF S
Sbjct: 1  MGRGKIEIKKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNSGRKFHEFIS 60


>30221.m002218 mads box protein, putative
          Length = 233

 Score = 74.3 bits (181), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
          M RGK  ++RIEN T+RQVTFSKRR GLLKK  ELSVLCDA++ LI+FS  GK+ ++ +
Sbjct: 1  MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCT 59


>30138.m004061 mads box protein, putative
          Length = 363

 Score = 71.6 bits (174), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/53 (58%), Positives = 44/53 (83%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53
          M R K +++R+E+ ++RQVT+SKRRNG+LKKA ELS+LCD  + L++FSP GK
Sbjct: 1  MGRVKLKIKRLESTSNRQVTYSKRRNGILKKAKELSILCDIHIVLLMFSPTGK 53


>29693.m002039 mads box protein, putative
          Length = 172

 Score = 70.1 bits (170), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 44/57 (77%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          M R K +M+ +++ +SRQVTFSKRR GL KKA EL+ LC A++A++VFSP GK + F
Sbjct: 1  MGRRKIEMKMVKDTSSRQVTFSKRRTGLFKKANELATLCAAQIAIVVFSPGGKPFSF 57


>28830.m000229 mads box protein, putative
          Length = 197

 Score = 67.4 bits (163), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/57 (54%), Positives = 40/57 (70%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          M R KTQM  I+  ++RQV+FSKRR G+ KKA EL  LC  E A+++FSP GK + F
Sbjct: 1  MGRKKTQMSLIQGESARQVSFSKRRTGIFKKASELCTLCAVEAAVVIFSPGGKAFTF 57


>30099.m001672 mads box protein, putative
          Length = 217

 Score = 66.6 bits (161), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/55 (58%), Positives = 41/55 (74%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          R K  M ++ N ++ QVTFSKRR+GL KKA ELS LC AE+A+IVFSP  K++ F
Sbjct: 8  RQKIDMVKMPNESNLQVTFSKRRSGLFKKASELSTLCGAEIAIIVFSPGKKVFSF 62


>29693.m002042 mads box protein, putative
          Length = 220

 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/55 (58%), Positives = 39/55 (70%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          R K  M+RIEN   R +TFSKRR+G+ KKA EL  LC AEV ++VFSP GK + F
Sbjct: 10 RQKITMKRIENEEDRLITFSKRRSGIYKKASELITLCGAEVGILVFSPAGKPFSF 64


>28348.m000077 mads box protein, putative
          Length = 215

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 41/53 (77%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLY 55
          R K +++++EN   R VTFSKR++G+ KKA ELS LC AE+A+++FS  GK++
Sbjct: 18 RQKIEIKKLENVNRRYVTFSKRKHGIFKKATELSTLCGAEIAVVLFSGHGKVF 70


>27866.m000233 mads box protein, putative
          Length = 217

 Score = 63.5 bits (153), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/55 (54%), Positives = 41/55 (74%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          R K +++ IE  ++ QVTFSKRR GL KKA ELS+LC A+VA++ FSP  K++ F
Sbjct: 14 RQKIEIKPIEGKSNLQVTFSKRRAGLFKKASELSLLCGAQVAVLAFSPGKKVFAF 68


>29813.m001508 mads box protein, putative
          Length = 360

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 26/53 (49%), Positives = 41/53 (77%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53
          M R K +++++EN   RQ T+ KR++G++KKA ELS+LCD ++ L++FSP GK
Sbjct: 1  MGRVKLKIKKLENTNGRQATYGKRKHGIIKKAKELSILCDIDIILLMFSPTGK 53


>29693.m002041 mads box protein, putative
          Length = 239

 Score = 62.4 bits (150), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFS 58
          R K +M++IEN   R +TFSKRR+G+ KKA EL  L  AE+A +V+SP GK + F+
Sbjct: 13 RQKIEMKKIENEDDRLITFSKRRSGIYKKASELVTLTGAELAFLVYSPAGKPFSFA 68


>29613.m000367 mads box protein, putative
          Length = 183

 Score = 61.6 bits (148), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 30/55 (54%), Positives = 36/55 (65%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          R K  + +I   +  QVTFSKRR GL KKA EL  LC  E+A+IVFSP GK + F
Sbjct: 8  RQKIAIEKISKKSHLQVTFSKRRAGLFKKASELCTLCGVEIAIIVFSPAGKAFSF 62


>30099.m001671 mads box protein, putative
          Length = 226

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 35/55 (63%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEF 57
          R K  + +I   T  QVTFSKRR GL KKA EL  LC  E+A++VFSP  K + F
Sbjct: 28 RQKIAIEKISKKTHLQVTFSKRRAGLFKKASELCTLCGVEIAILVFSPANKAFSF 82


>29838.m001672 mads box protein, putative
          Length = 207

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 28/57 (49%), Positives = 40/57 (70%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFSS 59
          R + +M +I   ++R VTFSKRR G+ KKA ELS LC AE+++IVFSP  + + F +
Sbjct: 9  RQRIEMVKISKESNRLVTFSKRRYGVFKKASELSTLCGAEISIIVFSPGKRAFSFGN 65


>29739.m003627 mads box protein, putative
          Length = 62

 Score = 58.5 bits (140), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 27/53 (50%), Positives = 39/53 (73%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53
          M R K ++ R+E+  +RQV +SKR+ G+LKK  EL+ LCD ++ LI+FSP GK
Sbjct: 1  MGRRKLKILRLESVKARQVKYSKRKLGVLKKGKELATLCDVDLGLIMFSPSGK 53


>27893.m000228 mads box protein, putative
          Length = 349

 Score = 57.0 bits (136), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 4/57 (7%)

Query: 5  KTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFS----PRGKLYEF 57
          K  M+++E+   R V+F+KRRNGL  KA EL +LCDA++A++V S    P+ K+Y F
Sbjct: 6  KRPMKKLESQKQRSVSFTKRRNGLFNKAAELFMLCDAQLAVLVASPCSKPKRKVYSF 62


>29912.m005524 mads box protein, putative
          Length = 338

 Score = 54.7 bits (130), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPR 51
          M RGK  M  I N  SR +T+ KR+ GL KK  E  +LCD +  +I+FSP+
Sbjct: 1  MGRGKLNMELISNEKSRMITYHKRKKGLTKKVQEFHILCDVDACIIIFSPK 51


>28180.m000391 mads box protein, putative
          Length = 328

 Score = 52.0 bits (123), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 1/54 (1%)

Query: 5  KTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSP-RGKLYEF 57
          K  M++ E    R V+F+KRR GL  KA EL +LCDA++AL+V SP   K+Y F
Sbjct: 6  KLPMKKRETKKQRSVSFTKRRYGLFNKAAELFMLCDAQLALLVSSPCSRKVYSF 59


>30190.m010925 conserved hypothetical protein
          Length = 386

 Score = 49.7 bits (117), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 33/53 (62%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGK 53
          M   + +M  IE  ++R +T+ KR+  L+KK  E S+LC  E  LI+F+P+ K
Sbjct: 1  MGHSRIKMELIEKESTRMLTYQKRKKSLVKKVSEFSILCGVEACLIIFAPKHK 53


>29653.m000299 mads box protein, putative
          Length = 166

 Score = 49.3 bits (116), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 36/56 (64%), Gaps = 3/56 (5%)

Query: 5  KTQMRRI-ENATSRQVTFSKRRNGLLKKAFELSVL--CDAEVALIVFSPRGKLYEF 57
          K ++++I +N T   VTFSKRR GL KKA E   L    AEVALI FSP G+ + F
Sbjct: 29 KIEIKKIQDNKTGLIVTFSKRRTGLFKKAMEFCNLDGGGAEVALITFSPSGRPFSF 84