Jatropha Genome Database

JcCA0022221.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0022221.10 - phase: 0 /partial
         (201 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30078.m002317 conserved hypothetical protein                          141   2e-34
29638.m000503 mom(plant), putative                                     60   7e-10

>30078.m002317 conserved hypothetical protein
          Length = 347

 Score =  141 bits (355), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 76/179 (42%), Positives = 109/179 (60%), Gaps = 12/179 (6%)

Query: 34  STQEVQVSRQSLSKGPIEFANACVQGLPLPRPRSTQRIGNETRVHGPRTRTSMND----- 88
           S QEVQ SRQ + + P+   N  ++ LPLP+ RS Q  G+++    P +R ++ D     
Sbjct: 138 SAQEVQFSRQPMPENPLGLTNPSIEDLPLPQSRSVQMGGHDSLSQEPSSRANVQDYRSMV 197

Query: 89  -------PSFHTNYVIPDIPKLAGSDPLPIEIERILRDERHELRMHEDMVLHIISEREKE 141
                   +   N+V+P+I  LA SDPL IE+ERI +D+  +  MHE ++LHI SER++E
Sbjct: 198 NDVGSVESTLLANHVMPEIHHLAWSDPLHIEMERIRKDDEQDCEMHEQIILHIKSERDRE 257

Query: 142 MREIFKKYEVLLQDAERAVHQKMEDHRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTR 200
           + E+ KKY++LL DAERA+  K +DH T  + VY SK LAE LMLK  +   A   D+R
Sbjct: 258 IEEVHKKYDMLLLDAERALLHKRKDHGTKFEKVYASKFLAEPLMLKQSNLNAAETADSR 316


>29638.m000503 mom(plant), putative
          Length = 1982

 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 53/95 (55%)

Query: 107  DPLPIEIERILRDERHELRMHEDMVLHIISEREKEMREIFKKYEVLLQDAERAVHQKMED 166
            DPL +E+ER+ ++    +  HE+  L + S+ E+E+ +I KKYEV LQ+ E     K ++
Sbjct: 1663 DPLQVELERLRKEADQIVNAHENTKLQLKSDCEQEVAQIRKKYEVKLQELESEFLMKKKE 1722

Query: 167  HRTNLQYVYLSKLLAETLMLKHQDYKGAVPPDTRQ 201
               N + V ++K+LAE    K  D K +  P   Q
Sbjct: 1723 MDMNEKKVLMNKILAEAFRSKCMDVKASSAPGIHQ 1757