Jatropha Genome Database

JcCA0020841.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020841.10 + phase: 0 /partial
         (79 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011214 Glutamate--cysteine ligase, chloroplast precursor,...   150   2e-37
48769.m000014 Glutamate--cysteine ligase, chloroplast precursor,...    52   5e-08

>30190.m011214 Glutamate--cysteine ligase, chloroplast precursor,
           putative
          Length = 526

 Score =  150 bits (378), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 71/79 (89%), Positives = 77/79 (97%)

Query: 1   VPVTGLKTPFRDGLLRHVAEDVLQLAKDGLQRRGFKEVGFLNEVAEVVRTGVTPAEKLLE 60
           VP TGLKTPFRDGLL+HVAEDVL+LAKDGL+RRG+KE+GFLNEV EVVRTGVTPAE+LLE
Sbjct: 448 VPKTGLKTPFRDGLLKHVAEDVLKLAKDGLERRGYKEIGFLNEVTEVVRTGVTPAERLLE 507

Query: 61  LYNGKWGQSVDPVFEELLY 79
           LYNGKWGQSVDPVFEELLY
Sbjct: 508 LYNGKWGQSVDPVFEELLY 526


>48769.m000014 Glutamate--cysteine ligase, chloroplast precursor,
           putative
          Length = 318

 Score = 52.4 bits (124), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 34/83 (40%), Positives = 44/83 (53%), Gaps = 7/83 (8%)

Query: 1   VPVTGLKTPFRDG-LLRHVAEDVLQLAKDGLQRR------GFKEVGFLNEVAEVVRTGVT 53
           VP   L  P   G  LR +A +VL +A  GL  R      G  E GFL+ + EVVRTG  
Sbjct: 233 VPKLALDAPLPGGGKLRDIAGEVLDIAAAGLNARARLNASGDNESGFLDPLREVVRTGKV 292

Query: 54  PAEKLLELYNGKWGQSVDPVFEE 76
           PA+ LL+ + G W   +  V+EE
Sbjct: 293 PAQVLLDRFEGDWQGDIRRVYEE 315