Jatropha Genome Database

JcCA0020831.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020831.40 + phase: 2 /TE
         (1057 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29930.m000615 conserved hypothetical protein                           82   2e-15
29822.m003393 nuclease, putative                                       73   6e-13
59505.m000053 nuclease, putative                                       68   3e-11

>29930.m000615 conserved hypothetical protein
          Length = 97

 Score = 82.0 bits (201), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 43/97 (44%), Positives = 66/97 (68%)

Query: 925  MEAVLPIELEVQSVRIIRESQISEADWAENYHLQLLGMDEKRLRAIHQTQVYQRRMARHF 984
            MEA+L +E+E+ S+R++ E++I+EA W  + + QL  +DE   RA++ T +YQ+R AR  
Sbjct: 1    MEAILLVEVEINSLRVLIEAEIAEAKWGRDRYEQLKLIDETMTRAMYHTLLYQQRTARVS 60

Query: 985  NKKVKDRKLEEGCLVLKEIRQPIIDPRGKFRPHWAGP 1021
            +K VK R L++G LVLKE +   +D  GK RP+  GP
Sbjct: 61   DKHVKPRPLKKGNLVLKEGKLVDLDHLGKLRPNSEGP 97


>29822.m003393 nuclease, putative
          Length = 255

 Score = 73.2 bits (178), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 55/146 (37%), Positives = 73/146 (50%), Gaps = 10/146 (6%)

Query: 479 LLSLESEVWEMYFDGASNYHGN----GVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEAC 534
           L S+ S + E  FDGAS   GN    G G V +   G  + +  +     TNN AEY A 
Sbjct: 109 LGSMSSCILE--FDGASK--GNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAV 164

Query: 535 IKGLEAALEKGIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHY 594
           I GL+ AL KG K ++V GDSNL+V Q    WKIK + +    +   EL  +F      +
Sbjct: 165 ILGLKHALRKGFKHIRVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIEH 224

Query: 595 LPRAKNQFADALATLASMVNVGGDQV 620
           + R  N  AD  A LA  VN+   Q+
Sbjct: 225 VLREFNSEADTQANLA--VNLKDGQI 248


>59505.m000053 nuclease, putative
          Length = 262

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 46/126 (36%), Positives = 64/126 (50%), Gaps = 6/126 (4%)

Query: 489 MYFDGASNYHGN----GVGVVFKTPCGEYIPIAVKLDFNCTNNEAEYEACIKGLEAALEK 544
           + FDGAS   GN    G G + +T  G  I    +     TNN AEY A I G++ AL+K
Sbjct: 123 LEFDGAS--KGNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMILGMKYALKK 180

Query: 545 GIKILKVFGDSNLIVSQALRKWKIKEERLVPYLRRLDELAQQFEDLSFHYLPRAKNQFAD 604
           G   ++V GDS L+ SQ    WK+K + +     +  +L  +F      ++ RA N  AD
Sbjct: 181 GYTKIRVQGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQISHVLRALNSEAD 240

Query: 605 ALATLA 610
           A A LA
Sbjct: 241 AQANLA 246