Jatropha Genome Database

JcCA0020761.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.30 + phase: 0 /partial
         (309 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008874 Eukaryotic translation initiation factor 3 subunit...   602   e-173

>30128.m008874 Eukaryotic translation initiation factor 3 subunit,
           putative
          Length = 994

 Score =  602 bits (1552), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 286/309 (92%), Positives = 290/309 (93%)

Query: 1   MATYAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPLEKIMFKYVELCVDM 60
           MAT+AKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKP EKIMF+YVELCVDM
Sbjct: 1   MATFAKPENALKRAEELINVGQKQDALQALHDLITSKRYRAWQKPYEKIMFRYVELCVDM 60

Query: 61  RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSXXXXXXXXXXXXXXX 120
           RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARS               
Sbjct: 61  RRGRFAKDGLIQYRIVCQQVNVNSLEEVIKHFMHLSTEKAEQARSQSQALEEALDVDDLE 120

Query: 121 XXKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180
             KRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH
Sbjct: 121 ADKRPEDLMLSYVSGEKGKDRSDRELVTPWFKFLWETYRTVLEILRNNSKLEALYAMTAH 180

Query: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240
           RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI
Sbjct: 181 RAFQFCKQYKRTTEFRRLCEIIRNHLANLNKYRDQRDRPDLSAPESLQLYLDTRFEQLKI 240

Query: 241 ATELELWQEAFRSIEDIHGLMCMVKKTPKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL 300
           ATELELWQEAFRSIEDI+GLMCMVKK+PKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL
Sbjct: 241 ATELELWQEAFRSIEDIYGLMCMVKKSPKPSLMVVYYAKLTEIFWISSSHLYHAYAWFKL 300

Query: 301 FTLQKSFNK 309
           F LQKSFNK
Sbjct: 301 FILQKSFNK 309