Jatropha Genome Database

JcCA0020761.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020761.20 - phase: 0 
         (250 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30128.m008873 hypothetical protein                                     93   1e-19

>30128.m008873 hypothetical protein
          Length = 274

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/260 (32%), Positives = 114/260 (43%), Gaps = 83/260 (31%)

Query: 39  KVQRNDDDNISTDHQTGPSEAKILKRVDQYFAVLDDHDXXXXXXXXFNRLLQIXXXXXXX 98
           +V RNDDD+    + +  +E+++LKR +                  F ++L+        
Sbjct: 50  EVPRNDDDS----NHSSSAESQLLKRTE------------SDGTSPFRKILETENEEQRK 93

Query: 99  XXXXXXXXXXXXQPNKAEKHLKVSPSLSRLFRKSTSCNNFIKSKNHNI------------ 146
                       +P+KA      S SLSR F K +   N ++ K + I            
Sbjct: 94  ANMEKKANNK--KPSKAG-----SSSLSRFFHKKSCSFNCMRVKINKIDINSSLSTSTSF 146

Query: 147 -------------SPTNVGKIAEAVVGGQASRVAFNRSTSDTMNLQQAPSRISTTHRKLK 193
                        S ++ G++AE ++G Q S          T +L + PSRI TT +KLK
Sbjct: 147 SSTRSSFRFNSQNSCSSTGRVAE-IMGRQGS----------THSLPRVPSRILTTKQKLK 195

Query: 194 MAQSSSNQET-----------------------SEREDRGGEQQELCKKRILMGEKCRPL 230
           MA S +   +                       SE EDRGG   ELCKKRILMG KCRPL
Sbjct: 196 MAHSLTKMGSRRKSRSEDRDECESLIRMESGRKSEWEDRGG-GVELCKKRILMGGKCRPL 254

Query: 231 SYSGTLQYDKDGTLLPDAIP 250
           + SGTLQYDKDG LLPD IP
Sbjct: 255 NNSGTLQYDKDGVLLPDIIP 274