Jatropha Genome Database

JcCA0020601.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020601.20 + phase: 0 
         (228 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

28226.m000863 conserved hypothetical protein                           49   2e-06

>28226.m000863 conserved hypothetical protein
          Length = 213

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 50/101 (49%), Gaps = 7/101 (6%)

Query: 127 LAEEEREATNECMAVVPWVPSQAAFARGIDTSQAEAPDLMEAEQVG-EETMEIEFEGNNT 185
           ++   RE +++ +AV PW+ S+        TS AE      +E  G EE M+ +    ++
Sbjct: 119 ISNRRREESDDSLAVAPWLASRLPV-----TSAAEGQARGLSETAGGEEEMDTDEANASS 173

Query: 186 IQSNELESGGMMSGTQGLPQWQQQHCLIPQLPQNTSTPITW 226
                 E GG++ G +    W Q HC+ PQ   NT+T I+W
Sbjct: 174 TGGEAFEFGGILGGVEARKHWNQ-HCMEPQQIGNTNTTISW 213