Jatropha Genome Database

JcCA0020581.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020581.20 + phase: 2 /TE
         (950 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29822.m003393 nuclease, putative                                       65   1e-10
59505.m000053 nuclease, putative                                       61   2e-09

>29822.m003393 nuclease, putative
          Length = 255

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 50/134 (37%), Positives = 64/134 (47%), Gaps = 4/134 (2%)

Query: 382 MYFDGAS--NYHGNGVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACIKGLEAALEKGI 439
           + FDGAS  N    G G V +   G  V +  +     TNN AEY A I GL+ AL KG 
Sbjct: 117 LEFDGASKGNPGPAGAGAVLRAEDGSMVCLLREGLGTATNNVAEYRAVILGLKHALRKGF 176

Query: 440 KVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYLPRAKNQFADAL 499
           K ++V  DSNL+V Q    WKIK + +        EL   F      ++ R  N  AD  
Sbjct: 177 KHIRVRGDSNLVVMQIKGLWKIKSQNVADLCKEAKELKNKFLSFQIEHVLREFNSEADTQ 236

Query: 500 ATLASMVNIGGDQV 513
           A LA  VN+   Q+
Sbjct: 237 ANLA--VNLKDGQI 248


>59505.m000053 nuclease, putative
          Length = 262

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 6/141 (4%)

Query: 373 LSFESEVWEMYFDGASNYHGN----GVGVVFKTPCGEYVPIAVKLDFDCTNNEAEYEACI 428
           L ++ +   + FDGAS   GN    G G + +T  G  +    +     TNN AEY A I
Sbjct: 114 LYYDDDSCILEFDGASK--GNPGPAGAGALLRTTDGRIICRLREGLGQVTNNVAEYRAMI 171

Query: 429 KGLEAALEKGIKVLKVFEDSNLIVSQALRKWKIKEERLVPYLXRLDELAQXFEDLSFHYL 488
            G++ AL+KG   ++V  DS L+ SQ    WK+K + +     +  +L   F      ++
Sbjct: 172 LGMKYALKKGYTKIRVQGDSKLVCSQVQGLWKVKHKDMTNLYEQAKQLKDKFASFQISHV 231

Query: 489 PRAKNQFADALATLASMVNIG 509
            RA N  ADA A LA  +  G
Sbjct: 232 LRALNSEADAQANLAIQLADG 252