Jatropha Genome Database

JcCA0020441.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020441.10 - phase: 0 /partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29962.m000051 conserved hypothetical protein                          427   e-120

>29962.m000051 conserved hypothetical protein
          Length = 1613

 Score =  427 bits (1099), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 208/221 (94%), Positives = 214/221 (96%)

Query: 7    LAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 66
            LAQLPPDFH+QLYMEASRIIKESWWLTD KRSLGELDSAVGYALLDPTWAAQDNTSTAIG
Sbjct: 1393 LAQLPPDFHLQLYMEASRIIKESWWLTDAKRSLGELDSAVGYALLDPTWAAQDNTSTAIG 1452

Query: 67   NIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSK 126
            NIVALLHSFFSNLPQEWLEGTH I+KHL+PITSVAMLRIAFRIMGPLLPRLANAHSLF+K
Sbjct: 1453 NIVALLHSFFSNLPQEWLEGTHAIVKHLRPITSVAMLRIAFRIMGPLLPRLANAHSLFNK 1512

Query: 127  TLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLA 186
            TL LLLNTM +VFGRNSQPSTPVEASEI DLIDFLHHVIHYEGQGGPVQANSKPR EVLA
Sbjct: 1513 TLLLLLNTMVDVFGRNSQPSTPVEASEIADLIDFLHHVIHYEGQGGPVQANSKPRAEVLA 1572

Query: 187  LCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPKLVQNPS 227
            LCGRAAE+LRPDIQHLLSHLKPD NSSIYAATHPKLVQNPS
Sbjct: 1573 LCGRAAESLRPDIQHLLSHLKPDVNSSIYAATHPKLVQNPS 1613