Jatropha Genome Database

JcCA0020001.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.20 - phase: 0 
         (470 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003632 tryptophan synthase beta chain, putative                746   0.0  
29666.m001491 tryptophan synthase beta chain, putative                345   2e-95
29980.m000183 tryptophan synthase beta chain, putative                 58   1e-08

>29842.m003632 tryptophan synthase beta chain, putative
          Length = 463

 Score =  746 bits (1925), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 354/462 (76%), Positives = 402/462 (87%)

Query: 1   MLMACNIQTSFYNRQVENLSPASRHLLSNRRTGNSHVVCAKIFTRESPQIRKSEVTNTNR 60
           M ++C+IQTSF+N +++NL  A R++ + RRT N  VVCAK  T E+P   K +V     
Sbjct: 1   MDISCSIQTSFFNGKLQNLRSAVRYVAAQRRTANIRVVCAKTLTSENPNSSKLDVVKPKI 60

Query: 61  HAATEKRVSKVNPGKFGRFGGNYVPEILVACLRELETQFISALRDPLFQEELATALRDYV 120
                  +   +PGKFGRFGG +VPE L+ CLR+LE  F S L+DP FQEELATALRDYV
Sbjct: 61  KILVPNNLPLPSPGKFGRFGGKFVPETLITCLRDLEAVFNSVLKDPEFQEELATALRDYV 120

Query: 121 GRETPLYFAERLTNHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSVV 180
           GRETPLY+AERLTNHYK E G+GPEIYLKREDLNH GAHK+NNAIAQAMIAKRMG+++VV
Sbjct: 121 GRETPLYYAERLTNHYKNEKGEGPEIYLKREDLNHTGAHKLNNAIAQAMIAKRMGMETVV 180

Query: 181 AATGAGQHGVATAAACAKLSLECTVLMGTTDMEKQSSNVLLMKLLGAQVKAVNGNFKDAS 240
           AATGAGQHGVATAAACAKLSL+CTV MGT+DME+QSSNVLLMKLLGA+VKAV GNFKDAS
Sbjct: 181 AATGAGQHGVATAAACAKLSLQCTVFMGTSDMERQSSNVLLMKLLGAEVKAVAGNFKDAS 240

Query: 241 SEAVREWVGNLETSYYLSGTAVGPHPCPTMVRQFQSVIGKEIRKQAMEKWGGKPDVLIAC 300
           SEA+REWVGNL+TSYYL+GT VGPHP P+MVR+FQSVIGKE R+QAMEKWGGKPDVL+AC
Sbjct: 241 SEAIREWVGNLQTSYYLAGTVVGPHPSPSMVREFQSVIGKETRRQAMEKWGGKPDVLVAC 300

Query: 301 VGSGSNALGAFYEFIEDEDVRLIGVEAAGFGLDSGKHAATLAMGDVGVYHGAMSYLLQDE 360
           VGSGSNALG F EFI DEDVRLIGVEAAGFGL+SGKHAATLA G+VGVYHGAMSYLLQDE
Sbjct: 301 VGSGSNALGLFNEFIGDEDVRLIGVEAAGFGLNSGKHAATLAKGEVGVYHGAMSYLLQDE 360

Query: 361 EGQILGPHSIGVGLEYPGVSPELSLLKETKRAEFYSATDKEAVEAFKRLCKLEGIIPALE 420
           EGQI+GP+SIGVGLEYPGVSPELS LKE +RAEFYSATD+EA+ A++RLCKLEGIIPALE
Sbjct: 361 EGQIIGPYSIGVGLEYPGVSPELSFLKEIERAEFYSATDEEAINAYQRLCKLEGIIPALE 420

Query: 421 ASHALAFLEKLCPTLPSGIKIIVNCSGVGDKDAATVLNYKAN 462
           ASHALAFLEKLCP L +G K+IV+CSG GDKDAATVLNYK +
Sbjct: 421 ASHALAFLEKLCPNLSNGTKVIVSCSGRGDKDAATVLNYKQD 462


>29666.m001491 tryptophan synthase beta chain, putative
          Length = 394

 Score =  345 bits (886), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 162/287 (56%), Positives = 210/287 (73%), Gaps = 6/287 (2%)

Query: 43  FTRESPQIRKSEVTNTNRHAATEKRVSKVNPGKFGRFGGNYVPEILVACLRELETQFISA 102
            TRE+  ++  E    +  A  ++  S    G+FG+FGG YVPE L+  L ELE+ F S 
Sbjct: 56  LTREASAVKMEEEKEGSDPALWQRPDSF---GRFGQFGGKYVPETLMYALSELESAFHSL 112

Query: 103 LRDPLFQEELATALRDYVGRETPLYFAERLTNHYKKEDGKGPEIYLKREDLNHCGAHKMN 162
             D  FQ+EL   L+DYVGRETPLYFAERLT HY + +G+GP IYLKREDLNH GAHK+N
Sbjct: 113 KDDLDFQKELDGILKDYVGRETPLYFAERLTEHYGRPNGEGPHIYLKREDLNHTGAHKIN 172

Query: 163 NAIAQAMIAKRMGLKSVVAATGAGQHGVATAAACAKLSLECTVLMGTTDMEKQSSNVLLM 222
           NAI Q ++AKR+G + ++A TGAGQHGVATA  CA+  L+C + MG  DME+Q+ NV  M
Sbjct: 173 NAIGQVLLAKRLGKERIIAETGAGQHGVATATVCARFGLQCIIYMGAQDMERQALNVFRM 232

Query: 223 KLLGAQVKAVN---GNFKDASSEAVREWVGNLETSYYLSGTAVGPHPCPTMVRQFQSVIG 279
           +LLGA+V+AV+      KDA+SEA+R+WV N+ET++Y+ G+  GPHP P MVR+F  +IG
Sbjct: 233 RLLGAEVRAVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPYPMMVREFHRIIG 292

Query: 280 KEIRKQAMEKWGGKPDVLIACVGSGSNALGAFYEFIEDEDVRLIGVE 326
            E R+QAMEKWGGKPDVL+ACVG GSNA+G F +F+ D+DVRLI  +
Sbjct: 293 TETRRQAMEKWGGKPDVLVACVGGGSNAMGLFDDFVNDKDVRLIAFK 339



 Score = 89.4 bits (220), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 39/55 (70%), Positives = 46/55 (83%)

Query: 405 AFKRLCKLEGIIPALEASHALAFLEKLCPTLPSGIKIIVNCSGVGDKDAATVLNY 459
           AFKRL +LEGIIPALE SHALA+LEKLCPTL +G K+++NCSG GDKD  T + Y
Sbjct: 337 AFKRLSRLEGIIPALETSHALAYLEKLCPTLANGTKVVLNCSGRGDKDVQTAIKY 391


>29980.m000183 tryptophan synthase beta chain, putative
          Length = 212

 Score = 57.8 bits (138), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/86 (38%), Positives = 47/86 (54%), Gaps = 4/86 (4%)

Query: 120 VGRETPLYFAERLTNHYKKEDGKGPEIYLKREDLNHCGAHKMNNAIAQAMIAKRMGLKSV 179
           + R TPL  A+RL    +K      +IY K E ++  G+HK N A+ Q     + G+K+V
Sbjct: 127 LWRPTPLIRAKRL----EKLLDTPAKIYYKYEGVSPAGSHKPNTAVPQVFYNAQQGIKNV 182

Query: 180 VAATGAGQHGVATAAACAKLSLECTV 205
           V  TGAGQ G + A AC+   L C +
Sbjct: 183 VTETGAGQWGSSLAFACSLFGLGCEI 208