Jatropha Genome Database

JcCA0020001.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0020001.10 + phase: 0 /pseudo/partial
         (672 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29842.m003631 conserved hypothetical protein                          645   0.0  
29092.m000457 conserved hypothetical protein                          121   9e-28

>29842.m003631 conserved hypothetical protein
          Length = 1023

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 326/462 (70%), Positives = 356/462 (77%), Gaps = 10/462 (2%)

Query: 188  VLNAKGRNREFRMPFXXXXXXXXXXXXLAPLVDKLPDTDGQYVRPPTLPSRVGSSIAPST 247
            ++NAKGRNR+ +MPF            LA LVD+LPD D Q +RPPTLPSR+ SS A S+
Sbjct: 556  LINAKGRNRDLQMPFSGSGISSSGSEILASLVDQLPDADAQIIRPPTLPSRMSSSTALSS 615

Query: 248  AGVWPLVNVHKSHXXXXXXXXXXQKQSRSQFDSTNARNTVVNQGLQQSTFSSEQQFNGFE 307
             GVWPLVNVHKSH          Q QSRS  D  NA NT VNQG Q+S+F SEQQ NG E
Sbjct: 616  TGVWPLVNVHKSHQPPLRPIFPPQMQSRSLLDPRNASNTAVNQGFQKSSFLSEQQLNGLE 675

Query: 308  SMEPSLTKQPLLPSRHATLNQQNQAQVNHFQPQFLPSNEARENFPLSISSLPHQTRVSTL 367
            S E SLTKQPLLPS+HA +NQQNQ QVN FQPQ       RENFP S++SLP      T 
Sbjct: 676  SKEHSLTKQPLLPSQHAAMNQQNQGQVNPFQPQ-------RENFPPSVASLPPHPLAPTF 728

Query: 368  DPVHATQGHGAAMSMVRSNPVPFM-LPLPVNNIPNTLQ-XXXXXXXXXXXXXXXXQMIHV 425
            D  + TQ HG+AMS + SN V  M LPLPVNNIPNT+                   MI +
Sbjct: 729  DHRYVTQAHGSAMSRIHSNLVSSMPLPLPVNNIPNTMHLQVGVRPPLPPGPPPASHMIPI 788

Query: 426  PQNVGPVAPNQPPGSAFSGLIGSLMAQGLISLTKQTPGQDSVGLEFNADLIKVRHESAIS 485
            PQN GPVA NQP G AFSGLI SL+AQGLISL KQTP QDSVGLEFNADL+KVRHESAIS
Sbjct: 789  PQNAGPVASNQPAGGAFSGLINSLVAQGLISL-KQTPVQDSVGLEFNADLLKVRHESAIS 847

Query: 486  ALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTKNRMSKNRKHKPSRKWFVDTSMWLSGAE 545
            ALYADLPRQCTTCGLRFKCQE+HSSHMDWHVT+NRMSKNRK KPSRKWFV  +MWL GAE
Sbjct: 848  ALYADLPRQCTTCGLRFKCQEDHSSHMDWHVTRNRMSKNRKQKPSRKWFVSATMWLRGAE 907

Query: 546  ALGTDAVPGFLPTESVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAV 605
            ALGTDAVPGFLPTE+VVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAV
Sbjct: 908  ALGTDAVPGFLPTEAVVEKKDDEEMAVPADEEQNACALCGEPFDDFYSDETEEWMYKGAV 967

Query: 606  YMNAPNGSTAGMERSQLGPIVHAKCRSESSVAPPEDFRCDDG 647
            Y+NAP+GSTA M+RSQLGPIVHAKCRSESSVAPPED R ++G
Sbjct: 968  YLNAPSGSTASMDRSQLGPIVHAKCRSESSVAPPEDIRSNEG 1009


>29092.m000457 conserved hypothetical protein
          Length = 1123

 Score =  121 bits (304), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 61/179 (34%), Positives = 94/179 (52%), Gaps = 19/179 (10%)

Query: 467  VGLEFNADLIKVRHESAISALYADLPRQCTTCGLRFKCQEEHSSHMDWHVTK-------N 519
            +GLEF +D+I+  H   I AL+ D P QC+ CGL+ K +E    H++WH+         N
Sbjct: 907  IGLEFKSDVIRESHPHVIGALFDDFPHQCSICGLQLKLKERLDRHLEWHIWSKPEPDGLN 966

Query: 520  RMSKNRKHKPSRKWFVDTSMWLSGAEALGTDAVPGFLPTESVVEKKDDEEMAVPADEEQN 579
            R+         R+W+ D   W++G   +    +   +  +      D++E  V ADE Q 
Sbjct: 967  RV---------RRWYADLGNWVAGKAEIPF-GIESSVSMDEFGRTVDEDEPMVLADENQC 1016

Query: 580  ACALCGEPFDDFYSDETEEWMYKGAVY--MNAPNGSTAGMERSQLGPIVHAKCRSESSV 636
             C LCGE F+D+YS + ++WM+K A++  ++   G       +  GPIVH  C SESSV
Sbjct: 1017 VCVLCGELFEDYYSQQRKKWMFKAAMHLTLSLKGGDIGTANENSKGPIVHVNCMSESSV 1075