Jatropha Genome Database

JcCA0013701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0013701.10 + phase: 0 /pseudo/partial
         (274 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30162.m001290 transcription factor, putative                          123   9e-29
29682.m000576 transcription factor, putative                          100   6e-22
30170.m013806 transcription factor, putative                           98   4e-21

>30162.m001290 transcription factor, putative
          Length = 515

 Score =  123 bits (308), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 56/64 (87%), Positives = 58/64 (90%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VTS KLWRQVGESF PPKTCTTVSWTFR FYEKALLEYEKHK+R GELPF DG LTEP+R
Sbjct: 264 VTSCKLWRQVGESFRPPKTCTTVSWTFRIFYEKALLEYEKHKMRNGELPFSDGPLTEPIR 323

Query: 61  VENQ 64
           VENQ
Sbjct: 324 VENQ 327


>29682.m000576 transcription factor, putative
          Length = 656

 Score =  100 bits (250), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 51/64 (79%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VT+ KLWRQVGESF PPKTCTTVSWTFR FYEKALL+YE+HK   GEL  P  S  EPV 
Sbjct: 411 VTTCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTNGGELNLPLTSNPEPVI 470

Query: 61  VENQ 64
           V+NQ
Sbjct: 471 VDNQ 474


>30170.m013806 transcription factor, putative
          Length = 449

 Score = 98.2 bits (243), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 51/65 (78%)

Query: 1   VTSYKLWRQVGESFNPPKTCTTVSWTFRNFYEKALLEYEKHKVRCGELPFPDGSLTEPVR 60
           VT+ KLWRQVGESF+PPKTCTTVSWTFR FYEKALLEYEKHK + GEL  P     +P  
Sbjct: 201 VTASKLWRQVGESFHPPKTCTTVSWTFRIFYEKALLEYEKHKRQSGELQLPSSPPHQPAS 260

Query: 61  VENQL 65
           VE ++
Sbjct: 261 VEKEV 265