Jatropha Genome Database

JcCA0012121.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0012121.10 + phase: 0 /pseudo/partial
         (736 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30115.m001231 DNA polymerase alpha catalytic subunit, putative       1195   0.0  
30156.m001758 DNA polymerase delta catalytic subunit, putative        138   1e-32
30128.m008782 DNA polymerase zeta catalytic subunit, putative          96   5e-20

>30115.m001231 DNA polymerase alpha catalytic subunit, putative
          Length = 1526

 Score = 1195 bits (3091), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 580/710 (81%), Positives = 621/710 (87%), Gaps = 1/710 (0%)

Query: 28   SFQGARAQRVEYLLLHAFHAKKYIVPDKNSSYVK-ETKMTKRRINHGGEERNAEELXXXX 86
            + QGARAQRVEYLLLHAFHAKKYIVPDKNS ++K ETKMTKRRI++G EE+NAEEL    
Sbjct: 817  TLQGARAQRVEYLLLHAFHAKKYIVPDKNSFHLKKETKMTKRRIHNGVEEKNAEELDTDH 876

Query: 87   XXXXXXXXXXXRXXXXXXPAYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 146
                       R      PAY GGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT
Sbjct: 877  ANFDNDSPENDRGKGKKGPAYVGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 936

Query: 147  VEKSTDGLVPRLPSGKKTGVLPELLKNLVERRRMVKSWMKNASGLKIQQLDIQQQALKLT 206
            VEKSTDGLVPRLPS K TGVLPELLKNLVERRRMVKSWMKNASGLK+QQLDIQQQALKLT
Sbjct: 937  VEKSTDGLVPRLPSIKTTGVLPELLKNLVERRRMVKSWMKNASGLKVQQLDIQQQALKLT 996

Query: 207  ANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSG 266
            ANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSG
Sbjct: 997  ANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSG 1056

Query: 267  LDDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGTPYEVI 326
            L+DITKAKAIAGKVIQEVNKKYRCLEIDLDG                  QFKDGTPYEVI
Sbjct: 1057 LEDITKAKAIAGKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKLQFKDGTPYEVI 1116

Query: 327  ERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEDMRNGQVELEK 386
            ERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQE+MRNGQV LEK
Sbjct: 1117 ERKGLDMVRRDWSLLSKELGDFCLAQILSGGSCEDVVESIHNSLMKVQEEMRNGQVALEK 1176

Query: 387  YVITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYIICSEQEASSGSMT 446
            Y+ITK+LTKPPEAYPDAKNQPHV+VALRLKQ GYTTGCS GDTVPYIIC EQ A+ GS +
Sbjct: 1177 YIITKTLTKPPEAYPDAKNQPHVMVALRLKQSGYTTGCSVGDTVPYIICCEQGATPGSSS 1236

Query: 447  GIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSK 506
            GIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSK
Sbjct: 1237 GIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSK 1296

Query: 507  FKNKXXXXXXXXXXXXLLFAVNDEERYRSCEPLILSCPSCSNTFECPAIFSSIGLIIGEK 566
            F+ K            LLFAVNDEERYRSCEPL+LSCPSCS TFECPA+F SI   I   
Sbjct: 1297 FQIKSSEAINNDPASSLLFAVNDEERYRSCEPLLLSCPSCSGTFECPAVFGSICTSISAN 1356

Query: 567  PIKPRVKESMSNFWRTMRCPRCPEEGDMGIISSAIIANQVKRQVEGFLSVYYKGLMMCDD 626
            P K +V+ES+SNFW  MRCP+CPEEGD G IS A++ANQVKRQ EGF+S+YYKGLM CDD
Sbjct: 1357 PTKLQVEESVSNFWCRMRCPKCPEEGDTGRISPAMLANQVKRQAEGFVSMYYKGLMTCDD 1416

Query: 627  ETCKYTTRSLNLRLVGDAEKGTVCANYPRCNGRLVRKYKEADLYKQLSYFCYLLDTVYCI 686
            ETCK+ TRSLNLRL+GD+E+GTVC NYPRCNGRLVRKY EA+LYKQLS++CYLLDTV C+
Sbjct: 1417 ETCKHITRSLNLRLIGDSERGTVCPNYPRCNGRLVRKYTEAELYKQLSFYCYLLDTVRCM 1476

Query: 687  EKMDANTRIPLEKELSKIRPIVDLALSTVKKIRDRCAYGWVQLNDLAVTV 736
            EKMDA TRI LEK+++KIRP+VDLA+STV+KIRDRCAYGWVQL+DL+VTV
Sbjct: 1477 EKMDAGTRISLEKKITKIRPMVDLAVSTVQKIRDRCAYGWVQLSDLSVTV 1526


>30156.m001758 DNA polymerase delta catalytic subunit, putative
          Length = 1049

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 193/423 (45%), Gaps = 46/423 (10%)

Query: 106 AYAGGLVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTTVEKSTD----GLVP----R 157
           +Y G  VLE   G Y+K +  LDF SLYPSI+  YN+C+ T+    D     L P    +
Sbjct: 505 SYEGATVLEANAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDVRKLNLPPECVNK 564

Query: 158 LPSGK-------KTGVLPELLKNLVERRRMVKSWMKNASG-LKIQQLDIQQQALKLTANS 209
            PSG+       + G+LPE+L+ L+  RR  K+ +K A   L+   LD +Q ALK++ANS
Sbjct: 565 TPSGETFVKPNLQKGILPEILEELLAARRRAKADLKEAKDPLEKAVLDGRQLALKVSANS 624

Query: 210 MYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLVQNNL--------NLEVIYGDTDSI 261
           +YG  G +  +     ++  +T  GR++++ T  LV++          N EVIYGDTDS+
Sbjct: 625 VYGFTGATVGQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTIMGGYEHNAEVIYGDTDSV 684

Query: 262 MIYSGLDDITKAKAIAGKVIQEVNKKYRCLEIDLDGXXXXXXXXXXXXXXXXXXQFKDGT 321
           M+  G+  + +A  +  +  + ++  +    I L+                    + +  
Sbjct: 685 MVQFGVPTVPEAMKLGREAAEYISGTF-IKPIKLEFEKVYYPYLLISKKRYAGLYWTNSD 743

Query: 322 PYEVIERKGLDMVRRDWS--------LLSKELGDFCLAQILSGGSCEDVVESIHNSLMKV 373
            ++ ++ KG     +  +        LL K L   CL +IL        V+ + N++   
Sbjct: 744 KFDKMDTKGEQSTFQPLTICXXXXNCLLVKNLVTECLHKILIDRDVPGAVQYVKNTI--- 800

Query: 374 QEDMRNGQVELEKYVITKSLTKPPEAYPDAKNQPHVLVALRLKQMGYTTGCSAGDTVPYI 433
             D+   +++L   VITK LTK  + Y       HV +A R+++    T  + GD VPY+
Sbjct: 801 -SDLLMNRMDLSLLVITKGLTKTGDDY--EVKAAHVELAERMRKRDAATAPNVGDRVPYV 857

Query: 434 ICSEQEASSGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHPVVSRLCASIQGTSP 493
           I         +  G     R  D +   +    ID  YYL  QI   + R+   I   + 
Sbjct: 858 IIK-------AAKGAKAYERSEDPIYVLENNIPIDPQYYLENQISKPLLRIFEPILKNAS 910

Query: 494 ERL 496
           + L
Sbjct: 911 KEL 913


>30128.m008782 DNA polymerase zeta catalytic subunit, putative
          Length = 2066

 Score = 95.9 bits (237), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 110/425 (25%), Positives = 177/425 (41%), Gaps = 74/425 (17%)

Query: 111  LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICF------------TTVEKSTDGLVPR- 157
            LV+EP+ G Y   V++LDF SLYPS+I  YN+CF             T+  S+    PR 
Sbjct: 648  LVMEPESGFYADPVVVLDFQSLYPSMIIAYNLCFCTCLGNVSSSKVNTLGVSSFSPDPRV 707

Query: 158  -----------------LPSGKKTGVLPELLKNLVERRRMVKSWMKNASGLKIQQL---- 196
                             +PS  + GVLP LL+ ++  R MVK  MK  +    QQ+    
Sbjct: 708  LGDLKDEILLTPNGVMYVPSKVRKGVLPRLLEEILSTRIMVKQAMKKLA--PTQQVLHRI 765

Query: 197  -DIQQQALKLTANSMYG--CLGFSNSRFYAKPLAELITLQGREILQSTVDLVQ--NNLNL 251
             + +Q ALKL AN  YG    GFS  R     LA+ I   GR  L+  + LV   +  N 
Sbjct: 766  FNARQLALKLIANVTYGYTAAGFS-GRMPCAELADSIVQCGRSTLEKAISLVNASDKWNA 824

Query: 252  EVIYGDTDSIMIYSGLDDITKAKAIAGKVIQEVNK-KYRCLEIDLDGXXXXXXXXXXXXX 310
             VIYGDTDS+ +      + ++  I  ++   V       + + L+              
Sbjct: 825  RVIYGDTDSMFVLLKGRTVEESFQIGREIASAVTAMNPDPVTLKLEKVYHPCFLLTKKRY 884

Query: 311  XXXXXQFKDGTPYEVIERKGLDMVRRD-----WSLLSKELGDFCLAQILSGGSCEDVVES 365
                 +  D T   V + KG++ VRRD       +L + L  F   Q +S          
Sbjct: 885  VGYSYESADQTE-PVFDAKGIETVRRDTCGAVAKMLEQSLRLFFEHQDIS---------E 934

Query: 366  IHNSLMKVQEDMRNGQVELEKYVITKSL------TKPPEAYPDAKNQPHVLVALRLKQMG 419
            I   L +    + +G+V L+ ++  K +      T+   + P     P  ++A +  ++ 
Sbjct: 935  IKGYLQRQWTRILSGRVSLQDFIFAKEVRLGTYSTRAASSLP-----PAAILATKAMKVD 989

Query: 420  YTTGCSAGDTVPYIICSEQEASSGSMTGIAQRARHPDELKKDDGKWMIDIDYYLSQQIHP 479
                    + VPY++   +  +      +      P +L   D  + ++  YY+S+QI P
Sbjct: 990  PRAEPRYAERVPYVVIHGEPGAR-----LVDMVVDPLDLLAIDSPYRLNDIYYISKQIIP 1044

Query: 480  VVSRL 484
             + R+
Sbjct: 1045 ALQRV 1049