Jatropha Genome Database

JcCA0011081.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0011081.10 - phase: 0 
         (214 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30068.m002642 Plastid lipid-associated protein 3, chloroplast pr...   157   4e-39
29738.m001051 Plastid-lipid-associated protein, chloroplast prec...    67   6e-12

>30068.m002642 Plastid lipid-associated protein 3, chloroplast
           precursor, putative
          Length = 367

 Score =  157 bits (396), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 93/172 (54%), Positives = 110/172 (63%), Gaps = 22/172 (12%)

Query: 43  HFSFKSPTRRTFPSLISFSSLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSITDE 102
           + +F+SPT   FPSLI  SSLS                                L+ITDE
Sbjct: 51  NLNFQSPT---FPSLIPCSSLSEPTPEPEPDPNPNPPP----------------LTITDE 91

Query: 103 WGEKIEPNTESDYPKYADADPPVRDDEWEEEYAAAGNGSTSQSTGVVVEKDDNVGDLKRI 162
           WGE++EP T+ +YPK  D DPP  DDEW  EY + GNGS     G+VVEKDD + DLKR 
Sbjct: 92  WGEQVEPETQPEYPKGTDEDPPKDDDEWGAEYESGGNGSAG---GLVVEKDDRIEDLKRC 148

Query: 163 LVDTVYGTNFGFQASPEIRAEVLELVNQLEAMNPTQTPVDAAEVLDGNWVLL 214
           LVDTVYGT FGFQASPEIR EVLELVNQLEA+NPT  PVD++++LDG W+LL
Sbjct: 149 LVDTVYGTKFGFQASPEIRGEVLELVNQLEALNPTPAPVDSSQILDGTWILL 200


>29738.m001051 Plastid-lipid-associated protein, chloroplast
           precursor, putative
          Length = 321

 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 28/58 (48%), Positives = 42/58 (72%)

Query: 156 VGDLKRILVDTVYGTNFGFQASPEIRAEVLELVNQLEAMNPTQTPVDAAEVLDGNWVL 213
           +  LK+ LVD+ YGT+ G +A+ E RAE++EL+ QLE+ NPT  P +A  +L+G W+L
Sbjct: 91  IDSLKKQLVDSFYGTDRGLKATSETRAEIVELITQLESKNPTAAPTEALTLLNGKWIL 148