Jatropha Genome Database
- JcCA0009771.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0009771.10 + phase: 0
(266 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
30170.m013744 sigma factor sigb regulation protein rsbq, putative 508 e-144
29970.m001027 sigma factor sigb regulation protein rsbq, putative 323 4e-89
29579.m000205 sigma factor sigb regulation protein rsbq, putative 305 1e-83
29970.m001033 sigma factor sigb regulation protein rsbq, putative 300 4e-82
29970.m001030 sigma factor sigb regulation protein rsbq, putative 289 8e-79
27553.m000319 sigma factor sigb regulation protein rsbq, putative 264 3e-71
29848.m004693 sigma factor sigb regulation protein rsbq, putative 252 1e-67
29970.m001032 sigma factor sigb regulation protein rsbq, putative 228 3e-60
29579.m000208 sigma factor sigb regulation protein rsbq, putative 108 2e-24
29970.m001028 sigma factor sigb regulation protein rsbq, putative 70 9e-13
29579.m000209 sigma factor sigb regulation protein rsbq, putative 65 2e-11
>30170.m013744 sigma factor sigb regulation protein rsbq, putative
Length = 266
Score = 508 bits (1309), Expect = e-144, Method: Compositional matrix adjust.
Identities = 247/266 (92%), Positives = 256/266 (96%)
Query: 1 MGTSLLEALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNP 60
MGT+LLEALNVRVVGSG+KILVLAHG GTDQSAWQRILPFFTQNYS+ILYDLVCAGSVNP
Sbjct: 1 MGTTLLEALNVRVVGSGDKILVLAHGFGTDQSAWQRILPFFTQNYSIILYDLVCAGSVNP 60
Query: 61 GYFDFRRYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIG 120
YFDFRRYTTLDA+VDDLL ILDALRV RCAYVGHSVSAMIG+LASI+RPELFSKLILIG
Sbjct: 61 DYFDFRRYTTLDAYVDDLLNILDALRVDRCAYVGHSVSAMIGILASIRRPELFSKLILIG 120
Query: 121 ASPRFLNDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFN 180
ASPRFLND DYHGGFER DIENVF AMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFN
Sbjct: 121 ASPRFLNDKDYHGGFERPDIENVFTAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFN 180
Query: 181 MRPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEI 240
MRPDITLFVSRTVFNSDLRGILGLVK PCCIIQTA+DVSVPASVAEYL+ HLGGR+TVEI
Sbjct: 181 MRPDITLFVSRTVFNSDLRGILGLVKVPCCIIQTAKDVSVPASVAEYLRIHLGGRNTVEI 240
Query: 241 LRTEGHLPHLSAPGLLAQVLRRALSR 266
LRTEGHLPHLSAP LLAQVLRRALSR
Sbjct: 241 LRTEGHLPHLSAPALLAQVLRRALSR 266
>29970.m001027 sigma factor sigb regulation protein rsbq, putative
Length = 270
Score = 323 bits (829), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 143/259 (55%), Positives = 201/259 (77%), Gaps = 1/259 (0%)
Query: 7 EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFR 66
EA NV+++G+GE+++VLAHG GTDQS W+ ++P ++ V+L+D + AG+ NP YFDF
Sbjct: 6 EAHNVKILGTGEQVIVLAHGFGTDQSVWKHLVPHLIDDFKVVLFDNMGAGTTNPDYFDFE 65
Query: 67 RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
RY L+ + DLL IL+ L+V C +VGHSVSAM+G++ASI RP+LF+K+++I ASPR+L
Sbjct: 66 RYAGLEGYAYDLLAILEELQVESCVFVGHSVSAMVGVVASISRPDLFTKIVMISASPRYL 125
Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRPDI 185
NDVDY+GGFE+ D+ +F AMEANY+AW +GFAPLAVG D+ + AV+EFSRTLFNMRPDI
Sbjct: 126 NDVDYYGGFEQEDLNQLFEAMEANYKAWCSGFAPLAVGGDMDSVAVQEFSRTLFNMRPDI 185
Query: 186 TLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEG 245
L V++T+F SD+R IL +V PC I+Q+ +D++VP V+EYL +LG S E++ T+G
Sbjct: 186 ALSVAQTIFQSDMRSILHMVSVPCHIVQSGKDLAVPVVVSEYLHQNLGSESIAEVMSTDG 245
Query: 246 HLPHLSAPGLLAQVLRRAL 264
HLP LS+P ++ VL R +
Sbjct: 246 HLPQLSSPDVVIPVLLRHI 264
>29579.m000205 sigma factor sigb regulation protein rsbq, putative
Length = 270
Score = 305 bits (782), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 135/259 (52%), Positives = 198/259 (76%), Gaps = 1/259 (0%)
Query: 7 EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFR 66
EA NV+V+GSGE+++VL+HG GTDQS W+ ++P F ++++V+LYD + AG+ NP Y+DF
Sbjct: 6 EAHNVKVLGSGEQVIVLSHGFGTDQSVWKYLVPHFIEDHTVVLYDNMGAGTTNPEYYDFE 65
Query: 67 RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
RY++++ FV DLL IL+ L+V C +VGHSV +M+G +ASI RP+LFSKL+++ A+PR L
Sbjct: 66 RYSSIEGFVYDLLAILEELQVKSCIFVGHSVLSMVGAIASIYRPDLFSKLVMLSATPRLL 125
Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAA-VREFSRTLFNMRPDI 185
ND+DY+GGF++ D++ +F M +NY+AW +GFAP+ VG D+ + V+EFSRTLFNMRPDI
Sbjct: 126 NDIDYNGGFQKEDLDQMFEGMSSNYKAWCSGFAPMIVGGDMESIYVQEFSRTLFNMRPDI 185
Query: 186 TLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEG 245
L +++ +F SD R IL +V P IIQ D++VP V+EYL+ +LGG STVE++ T G
Sbjct: 186 ALNLAKVIFQSDARHILSMVTKPVHIIQGTMDLAVPVKVSEYLRQNLGGPSTVELMPTSG 245
Query: 246 HLPHLSAPGLLAQVLRRAL 264
HLP LS P ++ V+ + +
Sbjct: 246 HLPQLSYPDIVIPVVLKHI 264
>29970.m001033 sigma factor sigb regulation protein rsbq, putative
Length = 269
Score = 300 bits (768), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 130/260 (50%), Positives = 195/260 (75%), Gaps = 1/260 (0%)
Query: 7 EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFR 66
EA NV+++GSGE+++VL HG GTDQS W+ ++P+ + Y VILYD + AG+ NP Y+DF
Sbjct: 6 EAHNVKILGSGERVIVLGHGFGTDQSVWKYLVPYLVEEYRVILYDNMGAGTTNPDYYDFE 65
Query: 67 RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
RY+TL+ FV DLL IL+ L++ C ++GHS SAM+G +AS+ RP+LF K+I+I A+PR L
Sbjct: 66 RYSTLEGFVYDLLAILEELQIKSCIFIGHSFSAMVGAIASVSRPDLFLKIIMISATPRLL 125
Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRPDI 185
N DY+GGF + D++ +F +++NY+AW +GFAPL V D+ + AV+EF+RTLFNMRPDI
Sbjct: 126 NAEDYYGGFNQEDVDQIFEGVKSNYKAWCSGFAPLVVSGDLESLAVQEFTRTLFNMRPDI 185
Query: 186 TLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRTEG 245
L +++ +F +D+R +L V PC I+Q+ +D++VP V+EYL +LG RS +E++ T G
Sbjct: 186 ALSLAQVIFLTDMRDVLPSVTVPCHILQSMKDMAVPMMVSEYLHQNLGSRSIIEVMPTSG 245
Query: 246 HLPHLSAPGLLAQVLRRALS 265
HLP LS+P ++ V+ + L+
Sbjct: 246 HLPQLSSPDIVIPVILKHLT 265
>29970.m001030 sigma factor sigb regulation protein rsbq, putative
Length = 269
Score = 289 bits (740), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 131/261 (50%), Positives = 194/261 (74%), Gaps = 1/261 (0%)
Query: 5 LLEALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFD 64
++EA NV V+GSG++++VLAHG GTD+S W+ ++P ++Y V+L+D + AG+ NP YFD
Sbjct: 3 IVEAHNVEVLGSGKQVIVLAHGFGTDKSVWKYLVPHLLEDYRVVLFDNMGAGTTNPDYFD 62
Query: 65 FRRYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPR 124
F RY+T++ FV D+L IL+ L V C VGH SAM+G +ASI RP+LFSKLI++ A+PR
Sbjct: 63 FERYSTIEGFVCDVLAILEELPVKSCIMVGHCFSAMVGAIASIYRPDLFSKLIMLCATPR 122
Query: 125 FLNDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRP 183
L+D +Y GGF + D++ +F M +NYEAW +GFAP VG D+ + AV++FSRTLFNMRP
Sbjct: 123 LLHDKNYIGGFNQEDLDQMFEGMCSNYEAWCSGFAPTVVGGDMDSVAVQDFSRTLFNMRP 182
Query: 184 DITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEILRT 243
DI+L +++ +F D+R IL +V PC I+Q+ D +VP +V++YL +LGG S +E++ T
Sbjct: 183 DISLSIAKMMFLFDMRHILPMVTIPCHILQSFNDAAVPVAVSDYLHQNLGGPSIIEVMPT 242
Query: 244 EGHLPHLSAPGLLAQVLRRAL 264
EGHLP L +PG++ V+ + +
Sbjct: 243 EGHLPQLKSPGIVVPVILKHI 263
>27553.m000319 sigma factor sigb regulation protein rsbq, putative
Length = 279
Score = 264 bits (675), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 122/261 (46%), Positives = 179/261 (68%)
Query: 2 GTSLLEALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPG 61
G + EALN +V G+G + LVLAHG G+DQ+ WQ ++P+ + ++++DLV + +VN
Sbjct: 8 GGGVAEALNAKVYGNGTETLVLAHGFGSDQNVWQFLIPYLACCFKIVVFDLVFSPNVNSS 67
Query: 62 YFDFRRYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGA 121
+D +Y+ L + DLL +LD L V++ Y+GHS+SAMIG A+++RP LF L+L+G
Sbjct: 68 LYDPIKYSNLTGYARDLLSLLDELNVNKTIYLGHSMSAMIGCTAALQRPHLFQHLVLLGG 127
Query: 122 SPRFLNDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPAAVREFSRTLFNM 181
SPR+LN YHGGFER+D++ + +M N+ +WV GFAP+AVG + A+ F+ +L M
Sbjct: 128 SPRYLNAEGYHGGFERSDVKAILRSMNHNFSSWVQGFAPVAVGMNNTEAITIFANSLGRM 187
Query: 182 RPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGRSTVEIL 241
+P I V++TVF SDLR IL V PC IIQ+ +D+ VP VA Y+K LGG + V+IL
Sbjct: 188 KPSIAHSVAKTVFLSDLRRILPQVSVPCTIIQSKKDIIVPEFVAHYMKKKLGGYAKVKIL 247
Query: 242 RTEGHLPHLSAPGLLAQVLRR 262
+TEGH PHL+A LL + L++
Sbjct: 248 KTEGHFPHLTAYPLLLKALKK 268
>29848.m004693 sigma factor sigb regulation protein rsbq, putative
Length = 276
Score = 252 bits (644), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 120/269 (44%), Positives = 182/269 (67%), Gaps = 5/269 (1%)
Query: 1 MGTSLLEALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSV-N 59
+ T L A+N +V+G+GE+ +VLAHG G DQSAW +I+P + + ++++D + +G+V +
Sbjct: 4 LETGLSTAMNAKVIGTGEETIVLAHGYGGDQSAWDKIVPDLAKYFRILVFDWLFSGAVKD 63
Query: 60 PGYFDFRRYTTLDAFVDDLLYILDALRV--HRCAYVGHSVSAMIGLLASIKRPELFSKLI 117
FD +Y + DAF DDL+ +L+ + + +VGHS+S MIG +ASIKRPELF +LI
Sbjct: 64 QQLFDPEKYASFDAFADDLICLLEEMSLISSPVVFVGHSMSGMIGCIASIKRPELFKRLI 123
Query: 118 LIGASPRFLNDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGA--DVPAAVREFS 175
L+GASPR++N DY GGF++ D++++ + +E+N++ W GFA L VGA P +V +F+
Sbjct: 124 LVGASPRYINIDDYEGGFKKTDVDDIISNIESNFQNWTPGFASLVVGAKDKDPDSVEQFT 183
Query: 176 RTLFNMRPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLKSHLGGR 235
+ L NM+P+ L V++TVF SD R IL V PC I+QT D+ VP SV Y++ + G+
Sbjct: 184 KCLSNMKPEHALSVAKTVFYSDEREILDKVSTPCTIVQTTGDLVVPNSVVYYMQEKIKGK 243
Query: 236 STVEILRTEGHLPHLSAPGLLAQVLRRAL 264
S+VE + T+GH PHL+A L VL L
Sbjct: 244 SSVEFIDTDGHFPHLTAHQQLLDVLTAVL 272
>29970.m001032 sigma factor sigb regulation protein rsbq, putative
Length = 217
Score = 228 bits (580), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 101/205 (49%), Positives = 153/205 (74%), Gaps = 1/205 (0%)
Query: 7 EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFR 66
EA NV+V+GSG++++V++ G GTDQS W+ ++P ++Y+VILYD + AG+ NP Y+DF
Sbjct: 6 EAHNVKVLGSGKQVIVISRGFGTDQSVWRYLVPHLIEDYTVILYDNMGAGTTNPDYYDFE 65
Query: 67 RYTTLDAFVDDLLYILDALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPRFL 126
RY++++ FV DLL IL+ L+V C +VGHS+ +M+G +ASI RP+ FSK++++ A+ R+L
Sbjct: 66 RYSSIEGFVYDLLAILEELQVKSCIFVGHSLLSMVGAIASIYRPDFFSKIVMLSATQRYL 125
Query: 127 NDVDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPA-AVREFSRTLFNMRPDI 185
ND++Y+GGF++ D++ +F M NY+AW +GFAP+ VG D+ + V+EFSRTLFNMRPDI
Sbjct: 126 NDMNYNGGFQKEDLDQMFEGMSFNYKAWCSGFAPMIVGGDMDSITVQEFSRTLFNMRPDI 185
Query: 186 TLFVSRTVFNSDLRGILGLVKAPCC 210
L +++ F D R IL K C
Sbjct: 186 ALSLAKVKFLFDARHILHNTKHHGC 210
>29579.m000208 sigma factor sigb regulation protein rsbq, putative
Length = 113
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 70/95 (73%)
Query: 170 AVREFSRTLFNMRPDITLFVSRTVFNSDLRGILGLVKAPCCIIQTARDVSVPASVAEYLK 229
V+EFSRTLFNMRPDI L +++ +F +D+R +L LV PC I+Q+ +D +VP SV+EYL
Sbjct: 5 VVQEFSRTLFNMRPDIVLSLAQVIFLTDMRHLLPLVTTPCHILQSPKDAAVPISVSEYLH 64
Query: 230 SHLGGRSTVEILRTEGHLPHLSAPGLLAQVLRRAL 264
+LGG+STVEI+ T GHLP L +P + V+ + L
Sbjct: 65 QNLGGQSTVEIMPTGGHLPQLGSPDAVISVILKHL 99
>29970.m001028 sigma factor sigb regulation protein rsbq, putative
Length = 158
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 67/120 (55%), Gaps = 15/120 (12%)
Query: 9 LNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCAGSVNPGYFDFRRY 68
L V V+ SGE+++VL HG+GTDQS W+ ++ + ++Y +L L+ +
Sbjct: 4 LYVNVLSSGERVVVLGHGLGTDQSVWKYLVLYLVKDYRWMLVPLIHINLILK-------- 55
Query: 69 TTLDAFVDDLLYIL----DALRVHRCAYVGHSVSAMIGLLASIKRPELFSKLILIGASPR 124
D + +L+++ LRV +V HS AM+G +A + R +LF KLI++ A+P+
Sbjct: 56 ---DTQLLKVLFMIYLPSRKLRVKSFVFVCHSYYAMVGFIAFVSRLDLFCKLIMLSATPK 112
>29579.m000209 sigma factor sigb regulation protein rsbq, putative
Length = 134
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 41/49 (83%)
Query: 7 EALNVRVVGSGEKILVLAHGIGTDQSAWQRILPFFTQNYSVILYDLVCA 55
EA NV+V+GSGE+++VL+HG GTDQS W+ ++P F ++++V+LYD + A
Sbjct: 6 EAHNVKVLGSGEQVIVLSHGFGTDQSVWKYLVPHFIEDHTVVLYDNMGA 54
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 44/69 (63%), Gaps = 11/69 (15%)
Query: 123 PRFLND----------VDYHGGFERADIENVFAAMEANYEAWVNGFAPLAVGADVPA-AV 171
P F+ D DY+GGF++ D++ +F M +NY++W + FAP+ VG D+ + V
Sbjct: 38 PHFIEDHTVVLYDNMGADYNGGFQKEDLDQMFEGMSSNYKSWCSRFAPMIVGGDMESIYV 97
Query: 172 REFSRTLFN 180
+EFSRTLFN
Sbjct: 98 QEFSRTLFN 106