Jatropha Genome Database

JcCA0009532.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0009532.10 - phase: 0 
         (429 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29900.m001555 hypothetical protein                                    452   e-127
30072.m000927 Protein WUSCHEL, putative                                99   3e-21
29669.m000805 Protein WUSCHEL, putative                                76   3e-14
30039.m000243 hypothetical protein                                     75   7e-14
27471.m000409 Protein WUSCHEL, putative                                74   2e-13
28102.m000106 Protein WUSCHEL, putative                                74   2e-13
30170.m013846 transcription factor, putative                           71   8e-13
29816.m000691 Protein WUSCHEL, putative                                71   1e-12
29830.m001452 DNA binding protein, putative                            70   1e-12
29876.m000245 transcription factor, putative                           68   6e-12
30170.m014389 DNA binding protein, putative                            68   9e-12

>29900.m001555 hypothetical protein
          Length = 390

 Score =  452 bits (1163), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/402 (60%), Positives = 273/402 (67%), Gaps = 34/402 (8%)

Query: 1   MASSNRHWPSMFKSKPCTSHHHQWQHEINSSSLVSSGCHKSPYTSVPGCEERSPEPKPRW 60
           MASSNRHWPSMFKSKPC +HH QWQHE+NSSSL S+GCH++PY SVPGCEERSPEPKPRW
Sbjct: 1   MASSNRHWPSMFKSKPCNTHHQQWQHEMNSSSLASTGCHRTPYASVPGCEERSPEPKPRW 60

Query: 61  NPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120
           NPKPEQIRILEAIFNSGMVNPPRDEIR+IRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR
Sbjct: 61  NPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLR 120

Query: 121 HLQN----------SKQQTYQNPSVXXXXXXXXXXXXXXXXXXXXXPKGSRRTLSLTSPN 170
            LQN           +     +P                       PK S++T+SL+S +
Sbjct: 121 LLQNSSKQHNSQQQQQTHQTTSPITPSITSLTAPSPSSSSSSEKCSPKCSKKTISLSSQS 180

Query: 171 VVDVSNSPTGSVNQTYFQAHNEFMTEPX---XXXXXXXXXXXXXXXXXXXCFSDLSNVAQ 227
           VVDVSNS TGSVNQTYFQ HNEFM EP                       CF D      
Sbjct: 181 VVDVSNSSTGSVNQTYFQQHNEFMPEPFFFPIQQTTTGAGGGTGSFTQGLCFQD------ 234

Query: 228 VQDNTVGPCTXXXXXXXXXXXXXXD---HENKNIKMQPNLSYPV-TAPITHT-IGLSPPF 282
             +N  GPCT                  H++KN+KMQ  LSYPV T PITH+   L+PP 
Sbjct: 235 --NNAAGPCTSLLLSEIMSCDASKKDLHHDDKNMKMQSYLSYPVSTTPITHSNTRLAPPL 292

Query: 283 PL---NPNSVTVPSTVNQI-QGVGESSPAGSSVAARSTVFINDVAIEVGVGPFNLREAFG 338
           P    + N+V V S++N I  GVGESS A     ARSTVFINDV  EVGVGPFN+REAFG
Sbjct: 293 PFPATDTNTVAVASSMNLINHGVGESSGA----VARSTVFINDVPFEVGVGPFNVREAFG 348

Query: 339 DDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLVPLSVTESV 380
           DDF+LIHSSG PVLTN+WGLTLHSLQHGASYYLVP S++E++
Sbjct: 349 DDFILIHSSGHPVLTNDWGLTLHSLQHGASYYLVPFSMSENI 390


>30072.m000927 Protein WUSCHEL, putative
          Length = 261

 Score = 99.4 bits (246), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 50/82 (60%), Positives = 63/82 (76%)

Query: 51  ERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQN 110
           ERS   + RW PKPEQI ILE+IFNSGMVNPP+DE  RIR  L+++G VGDANVFYWFQN
Sbjct: 19  ERSEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQN 78

Query: 111 RKSRSKHKLRHLQNSKQQTYQN 132
           R+SRS+ + R +Q +  +  +N
Sbjct: 79  RRSRSRRRQRQMQATLAEEQRN 100



 Score = 75.5 bits (184), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 42/57 (73%)

Query: 316 TVFINDVAIEVGVGPFNLREAFGDDFLLIHSSGQPVLTNEWGLTLHSLQHGASYYLV 372
           TVFIN V  EV  GP +++  FG D +L+HSSG PV TNE+G  +HSLQHG SY+LV
Sbjct: 200 TVFINGVPTEVPRGPLDMKAMFGQDVVLVHSSGMPVPTNEFGFLMHSLQHGESYFLV 256


>29669.m000805 Protein WUSCHEL, putative
          Length = 192

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 30/70 (42%), Positives = 46/70 (65%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP  EQ+++L  +F SG+  P  D+I++I  QL  YG++   NVFYWFQN K+R + K
Sbjct: 41  RWNPTSEQVKVLTDLFRSGLRTPSTDQIQKISTQLSFYGKIESKNVFYWFQNHKARERQK 100

Query: 119 LRHLQNSKQQ 128
            R +   +++
Sbjct: 101 RRRVSTDEKE 110


>30039.m000243 hypothetical protein
          Length = 163

 Score = 75.1 bits (183), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/68 (48%), Positives = 44/68 (64%)

Query: 53  SPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRK 112
           SP    RW P PEQ+ ILE ++ +G+  P   +I+RI A L  YG++   NVFYWFQN K
Sbjct: 2   SPAASSRWCPTPEQLMILEELYRNGIRTPNASQIQRITAHLSLYGKIEGKNVFYWFQNHK 61

Query: 113 SRSKHKLR 120
           +R + KLR
Sbjct: 62  ARDRQKLR 69


>27471.m000409 Protein WUSCHEL, putative
          Length = 297

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 59  RWNPKPEQIRILEAIF-NSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKH 117
           RW P  +QIRIL+ ++ NSG+ +P  ++I+RI A+L++YG++   NVFYWFQN K+R + 
Sbjct: 40  RWTPTTDQIRILKDLYYNSGVRSPTGEQIQRISARLRQYGKIEGKNVFYWFQNHKARERQ 99

Query: 118 KLR 120
           K R
Sbjct: 100 KKR 102


>28102.m000106 Protein WUSCHEL, putative
          Length = 401

 Score = 73.6 bits (179), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 41/67 (61%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP PEQ+R LE ++  G   P  ++I  I  QL+ YG++   NVFYWFQN K+R + K
Sbjct: 84  RWNPTPEQLRALEELYRRGTRTPTTEQIEHITKQLRRYGKIEGKNVFYWFQNHKARERQK 143

Query: 119 LRHLQNS 125
            R    S
Sbjct: 144 RRRQMES 150


>30170.m013846 transcription factor, putative
          Length = 228

 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 31/60 (51%), Positives = 39/60 (65%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP  EQI ILE ++  GM  P   +I +I AQL  YG++   NVFYWFQN K+R + K
Sbjct: 92  RWNPTQEQIGILEMLYRGGMRTPNAQQIEQITAQLSRYGKIEGKNVFYWFQNHKARERQK 151


>29816.m000691 Protein WUSCHEL, putative
          Length = 316

 Score = 70.9 bits (172), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP PEQ+  LE ++  G   P  ++I++I +QL+ +G++   NVFYWFQN K+R + K
Sbjct: 76  RWNPTPEQLLALEEMYRRGTKTPTAEQIQQIASQLRRFGKIEGKNVFYWFQNHKARERQK 135

Query: 119 LR 120
            R
Sbjct: 136 RR 137


>29830.m001452 DNA binding protein, putative
          Length = 247

 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/86 (37%), Positives = 51/86 (59%), Gaps = 13/86 (15%)

Query: 33  LVSSGCHKSPYTSVPGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQ 92
           L++SG HK                + RW P P Q+++LE IF+ G   P + +I+ I ++
Sbjct: 93  LMTSGGHKIT-------------ARQRWTPTPVQLQVLERIFDQGNGTPSKQKIKEITSE 139

Query: 93  LQEYGQVGDANVFYWFQNRKSRSKHK 118
           L ++GQ+ + NV+ WFQNR++RSK K
Sbjct: 140 LSQHGQISETNVYNWFQNRRARSKRK 165


>29876.m000245 transcription factor, putative
          Length = 268

 Score = 68.2 bits (165), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 42/63 (66%)

Query: 59  RWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSKHK 118
           RWNP  EQI +LE ++  G+  P  ++I++I  +L++YG +   NVFYWFQN K+R + K
Sbjct: 23  RWNPTKEQIGLLENMYRQGIRTPTAEQIQQITTRLRDYGHIEGKNVFYWFQNHKARQRQK 82

Query: 119 LRH 121
            + 
Sbjct: 83  QKQ 85


>30170.m014389 DNA binding protein, putative
          Length = 231

 Score = 67.8 bits (164), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 39/62 (62%)

Query: 57  KPRWNPKPEQIRILEAIFNSGMVNPPRDEIRRIRAQLQEYGQVGDANVFYWFQNRKSRSK 116
           + RW PK EQ+ ILE+IF      P R  I+ I  QL  +G + + NV+ WFQNR++RSK
Sbjct: 80  RQRWAPKAEQLEILESIFTQSKATPGRQRIKEIATQLSLHGPISETNVYNWFQNRRARSK 139

Query: 117 HK 118
            K
Sbjct: 140 RK 141