Jatropha Genome Database

JcCA0008021.30
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.30 - phase: 0 
         (157 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011093 Histone deacetylase complex subunit SAP18, putative     207   1e-54
30174.m008933 Histone deacetylase complex subunit SAP18, putative     177   2e-45

>30190.m011093 Histone deacetylase complex subunit SAP18, putative
          Length = 165

 Score =  207 bits (528), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 101/123 (82%), Positives = 114/123 (92%), Gaps = 1/123 (0%)

Query: 36  GLEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKD-EVQIYTWKDATLHELTDLVK 94
           G+E IDREKTCPLLLRVFTKIG+HHKMEDFAV GKEPKD EVQIYTWKDATL ELTDLVK
Sbjct: 43  GIELIDREKTCPLLLRVFTKIGNHHKMEDFAVRGKEPKDDEVQIYTWKDATLRELTDLVK 102

Query: 95  EVVPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHSNARRPYDAKALGELSFQIGDYLDV 154
           EV PEARR++A+LSFAFVYPD HGRF+LR+VG+THS+ARRP D+++L +L FQIGDYLDV
Sbjct: 103 EVAPEARRRNAKLSFAFVYPDKHGRFVLRMVGMTHSSARRPDDSRSLVQLGFQIGDYLDV 162

Query: 155 AIL 157
           AIL
Sbjct: 163 AIL 165


>30174.m008933 Histone deacetylase complex subunit SAP18, putative
          Length = 147

 Score =  177 bits (449), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/122 (77%), Positives = 105/122 (86%), Gaps = 1/122 (0%)

Query: 37  LEPIDREKTCPLLLRVFTKIGSHHKMEDFAVGGKEPKDEVQIYTWKDATLHELTDLVKEV 96
           ++P+DREKTCPLLLRVFTKIGSHH  EDFAV GKEPKDEVQIYTWKDATL ELTDLVKEV
Sbjct: 26  VQPVDREKTCPLLLRVFTKIGSHHSKEDFAVRGKEPKDEVQIYTWKDATLRELTDLVKEV 85

Query: 97  VPEARRQSARLSFAFVYPDIHGRFMLRVVGVTHSN-ARRPYDAKALGELSFQIGDYLDVA 155
            P ARR+ ARLSFAFVYPD +GRF++R VG T+SN + +  D KAL EL FQIGDYLDVA
Sbjct: 86  APAARRRDARLSFAFVYPDKNGRFVVREVGKTYSNRSGKLDDGKALAELGFQIGDYLDVA 145

Query: 156 IL 157
           IL
Sbjct: 146 IL 147