Jatropha Genome Database

JcCA0008021.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0008021.20 + phase: 0 
         (323 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011092 conserved hypothetical protein                          476   e-135
28223.m000096 conserved hypothetical protein                           64   8e-11

>30190.m011092 conserved hypothetical protein
          Length = 320

 Score =  476 bits (1226), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 245/324 (75%), Positives = 261/324 (80%), Gaps = 5/324 (1%)

Query: 1   MASKLAISLTSSGLSSAPIRKPVIXXXXXXXXXXXXXXIQFNGRHFCVRRRIFMLPIKAT 60
           MASKLA SLT   + SAPI KP+I                 +G+H  VRRRI +LPIKAT
Sbjct: 1   MASKLAFSLTFPRVYSAPILKPLISLSSSSRIHSSHL----HGKHLSVRRRILLLPIKAT 56

Query: 61  AXXXXXXXX-XXXXXSKILQYCSIDRKEKRSIGEMEQEFLQALQSFYYEGKAIMSNEEFD 119
           A               KILQYCSID+K+K+SIGEMEQEFLQALQ+FYYEGKAIMSNEEFD
Sbjct: 57  ADQQQGKVEGDEVVDGKILQYCSIDKKDKKSIGEMEQEFLQALQAFYYEGKAIMSNEEFD 116

Query: 120 NLKEELMWEGSSVVMLSSDEQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVVEG 179
           NLKEELMWEGSSVVMLS DEQKFLEASMAYVSG PI+SD+EFD+LK+RLKQEGSEIVVEG
Sbjct: 117 NLKEELMWEGSSVVMLSCDEQKFLEASMAYVSGNPIMSDEEFDQLKLRLKQEGSEIVVEG 176

Query: 180 PRCSLRSRKVYSDLSVDYLKMFLLYVPATVVAXXXXXXXXXXXXXEITYLLELPEPFSFI 239
           PRCSLRSRKVYSDLSVDYLKMFLL VPA VVA             EITYLLELPEPFSFI
Sbjct: 177 PRCSLRSRKVYSDLSVDYLKMFLLNVPAAVVALGLFFFLDDLTGFEITYLLELPEPFSFI 236

Query: 240 FTWFAAVPLIVWLAQSFTNAIVKDFLILKGPCPNCGTENLSFFGTILSVSSGGVTNMVKC 299
           FTWFAAVP+IVWL+ SFTNAIVKDFLILKGPCPNCGTEN SFFGTILS+SSGG TN VKC
Sbjct: 237 FTWFAAVPVIVWLSLSFTNAIVKDFLILKGPCPNCGTENQSFFGTILSISSGGTTNSVKC 296

Query: 300 SNCGTDMEYDSKTRLITLPEGSNA 323
           SNCGTDM YDSKTRLITLPEGSNA
Sbjct: 297 SNCGTDMVYDSKTRLITLPEGSNA 320


>28223.m000096 conserved hypothetical protein
          Length = 287

 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/196 (25%), Positives = 87/196 (44%), Gaps = 28/196 (14%)

Query: 139 EQKFLEASMAYVSGKPILSDQEFDELKMRLKQEGSEIVVEGPRCSLRSRKVYSDLSVDYL 198
           E  + +A  AY SG+P++ D  FD ++++L+  GS+ VV+ PRCS+R +  Y+D   D  
Sbjct: 69  EALYRQARDAYYSGQPLIVDDMFDRVELKLRWYGSKSVVKYPRCSIRRQSTYADAEDDIS 128

Query: 199 KMFLL------------------YVPATVVAXXXXXXXXXXXXXEITYLLELPEPFSFIF 240
           ++F L                   + + V+A             + + +  L      +F
Sbjct: 129 QVFALASIWIVFLTIGSSLCVGPIIYSFVLAYQDAISSKISQGSQASMVQFLATVNGILF 188

Query: 241 TWFAAVPLIVWLAQSFTNAIVK-----DFLILKGPCPNCGTENLSFFGTILSVSSGGVTN 295
              A   LI +   S +  +++     D + LKG CPNCG E  +F   + S  S    +
Sbjct: 189 --MAVGTLIGYPIASSSVKVLQGLWRNDLVALKGACPNCGEEVFAF---VKSDQSNNSPH 243

Query: 296 MVKCSNCGTDMEYDSK 311
              C  C + +E+ +K
Sbjct: 244 RADCHVCESLLEFRTK 259