Jatropha Genome Database

JcCA0007981.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0007981.20 - phase: 0 
         (287 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29813.m001474 Origin recognition complex subunit, putative            466   e-132

>29813.m001474 Origin recognition complex subunit, putative
          Length = 287

 Score =  466 bits (1199), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/287 (79%), Positives = 247/287 (86%)

Query: 1   MDLSEIAKKLGLSESKNLIRKAAELRRLCDVQFDSSIIGVGEVSKAIICLEIAATRFQVI 60
           MDLSEIAKKLGLSESK+++RKAAELRRLCDVQFDSS+IG+GEV KAIICLEIAATRFQVI
Sbjct: 1   MDLSEIAKKLGLSESKHIVRKAAELRRLCDVQFDSSVIGIGEVCKAIICLEIAATRFQVI 60

Query: 61  FDRQAAIRLSGLSEKAYTRSFNSLQNSLGVKTKLDIRELGIQFGCIRLIPLVKKGLSLYK 120
           FDRQAAIRLSG+SEKAY RSFNSLQNSLGVKTKLDIRELGIQFGC+RLIP VK GLSLYK
Sbjct: 61  FDRQAAIRLSGMSEKAYNRSFNSLQNSLGVKTKLDIRELGIQFGCVRLIPFVKNGLSLYK 120

Query: 121 ERFLASLPATRRASADFTRPVFTAVAFYLCAXXXXXXXXXXXXXEVCGTSESEFKSVSTS 180
           +RFLASLPA+RR +ADFTRPVFTAVAFYLCA             EVCGTSE+EFKSVSTS
Sbjct: 121 QRFLASLPASRRPTADFTRPVFTAVAFYLCAKRHKLKIDKLKLIEVCGTSEAEFKSVSTS 180

Query: 181 MNDLCYDVFGISKEKKDPREVKGNRELLDVLPEKRKFEDGGYLSDDGAELSSYKKRKTAE 240
           M DLC+DVFGISKEKKDPREVK NRELLDVLPEKRKFEDGGYLSDDG ELSSYKKRK  E
Sbjct: 181 MKDLCHDVFGISKEKKDPREVKCNRELLDVLPEKRKFEDGGYLSDDGPELSSYKKRKREE 240

Query: 241 KVAYQEWXXXXXXXXXXXXXXGPCKQTRQTRLNFFKEVPETAGLEAL 287
           +VAY++W              G CK+T+QTRL+F K+VPET GLEAL
Sbjct: 241 RVAYEDWKSSVMSSNEKGKAKGSCKRTKQTRLDFLKKVPETTGLEAL 287