Jatropha Genome Database

JcCA0006671.40
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006671.40 - phase: 0 
         (206 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003622 conserved hypothetical protein                          246   4e-66
29912.m005539 conserved hypothetical protein                          140   3e-34

>30146.m003622 conserved hypothetical protein
          Length = 215

 Score =  246 bits (629), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 132/209 (63%), Positives = 155/209 (74%), Gaps = 10/209 (4%)

Query: 1   MAISKVEXXXXXXXXXSPHYYTPIPCQHDQNYIVL-PFHHH--PTTFRGPSKPMIITIIC 57
           M ISK+E           HYYTPIPCQHD NY+VL P  HH  PT    P + +I+T + 
Sbjct: 3   MPISKLEQQQQ-----CSHYYTPIPCQHDDNYVVLQPLDHHRFPTIRLPPRRILIVTGVI 57

Query: 58  LLFIPALVYLLWPSDPNLRIVRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVYSMDLRR 117
            L I +++YL WPSDP L+IVRL LNK+HIHTLPIINIDVSL+VT+KVRNVDVYSMD   
Sbjct: 58  FLLI-SVIYLFWPSDPTLKIVRLRLNKLHIHTLPIINIDVSLHVTVKVRNVDVYSMDFTH 116

Query: 118 LDVALAYRGKRLGHVKVKGKGHVSALGSSYVDTELEFSGVRILSDVVFLLEDLAKGRVPF 177
           LD+AL YRGKRLGHV+  G+GHV AL SSYVD ELEFSGV +LSDVVFLLEDLA+G+VPF
Sbjct: 117 LDIALRYRGKRLGHVR-SGQGHVRALASSYVDAELEFSGVGVLSDVVFLLEDLARGKVPF 175

Query: 178 DTVIKVSGELGFLGLEFPFKVIIFQVYIL 206
           DTV KV G+ GFL    P K ++  V +L
Sbjct: 176 DTVTKVDGKFGFLFFGMPLKDMLEIVIVL 204


>29912.m005539 conserved hypothetical protein
          Length = 336

 Score =  140 bits (354), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 69/155 (44%), Positives = 106/155 (68%), Gaps = 2/155 (1%)

Query: 52  IITIICLLFIPALVYLLWPSDPNLRIVRLSLNKIHIHTLPIINIDVSLYVTIKVRNVDVY 111
           +++ I +LF+ A VY L+PSDP+L++ R+ LN IH+++ P   +D+S  + I+V+N D +
Sbjct: 67  LLSAITILFLSAAVYFLYPSDPSLQLARIQLNHIHVNSSPKFTLDLSFSLLIRVKNRDFF 126

Query: 112 SMDLRRLDVALAYRGKRLGHVKVKGKGHVSALGSSYVDTELEFSGVRILSDVVFLLEDLA 171
           S+D   LDV++ YRGK LG V  KG G+V   GSSY+   L+ +G+ I+ DV +L+EDLA
Sbjct: 127 SLDYDTLDVSVGYRGKELGVVSSKG-GNVRPRGSSYISAALDLNGLEIVHDVFYLIEDLA 185

Query: 172 KGRVPFDTVIKVSGELGFLGLEFPFKV-IIFQVYI 205
           +G +PFDT   V+GELGF   + P K  +  +VY+
Sbjct: 186 RGVIPFDTDTMVNGELGFFFFKIPIKAKVSCEVYV 220