Jatropha Genome Database

JcCA0006661.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006661.10 + phase: 2 /TE/partial
         (1311 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29674.m000206 conserved hypothetical protein                          199   1e-50
28296.m000014 conserved hypothetical protein                           89   1e-17
29997.m000412 conserved hypothetical protein                           53   8e-07

>29674.m000206 conserved hypothetical protein
          Length = 496

 Score =  199 bits (505), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 120/318 (37%), Positives = 192/318 (60%), Gaps = 15/318 (4%)

Query: 40  RLVKTRKESEEKDILETFRKVEVNIPLLDAIKQIPKYAKFLKELCTNKRKVDNVEKVEMG 99
           RL + + + +    L+ F+++++N+P ++AI Q+ KYAKFLKE+ +N RK++++ +V + 
Sbjct: 191 RLRQDKVDKQYSKFLDLFKQLKINLPFVEAISQMAKYAKFLKEILSNNRKLEDLGQVVLN 250

Query: 100 EVCSAMIQRKRLPPKCKDRGMFAIPCKIGNVGIKRSMCDLGASINVMPLSIYSSFKGCPL 159
           E CSA++Q K LP K +D   F IPC IG++ I  ++ DLGASIN+MP S+++       
Sbjct: 251 EECSAILQNK-LPLKRRDLESFTIPCMIGDLSISGALADLGASINLMPTSLFAKLGLHEP 309

Query: 160 KEMRIIIQLADRSIVYPVGLLEDVLVQVGDLIFPADFYVLNMEDDKSSTVADLLLGRPFL 219
           K  R+ +QLADR++  P G++EDVL++V   IFP DF V++ME +  STV  L+LGRPFL
Sbjct: 310 KPTRMSVQLADRTVKIPRGIIEDVLIKVDKFIFPVDFVVMDMEGE--STVP-LILGRPFL 366

Query: 220 RTARTKIDAYEGTLSMEFDGEKVEFNVYEAMKYPSDV-SSICSIDAIDPLAQEMFELNAV 278
            T+R  ID  +G L +  D E + F++  +M+   D  +++ S D ID + +        
Sbjct: 367 ATSRAVIDVSDGKLKLRVDDETITFDLATSMRQSLDYDNTVYSTDVIDDVVES------- 419

Query: 279 DELDLVLCRNINMDSIKEIEETFLVNENVQEIVCEMETNQPLTSSHSHIVLP-SHHEKLL 337
             L  +LC +    ++ E EE  L NE V E +  +  ++P  S+  ++ L  S  +K+ 
Sbjct: 420 -HLQEILCSDPLQVALAEDEEE-LSNEQVLEQLAVLLASEPSLSTDPYLFLDRSGVQKVK 477

Query: 338 PSVLQAPKLELKPLPGHL 355
            S    P L+LK LP HL
Sbjct: 478 TSFKDPPVLKLKELPSHL 495


>28296.m000014 conserved hypothetical protein
          Length = 90

 Score = 89.4 bits (220), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/87 (54%), Positives = 61/87 (70%)

Query: 343 APKLELKPLPGHLKYAFLGNGDTLPVIISSKLSEVEEECLVQVLREHKEAIGWTIADIKG 402
           APK+ELK L  HLKY +LG  +TLPVIIS+KL+ +++E +V+  R+ K  +  TI +I+ 
Sbjct: 1   APKVELKLLQSHLKYVYLGENNTLPVIISNKLTRLQKERVVKEPRDRKRVVSQTICNIQS 60

Query: 403 LSPSTCMHKILLEEGSKPTREAQRRLN 429
            S S  MHKILLEEGSK   E QR LN
Sbjct: 61  NSFSIYMHKILLEEGSKANFEPQRILN 87


>29997.m000412 conserved hypothetical protein
          Length = 66

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 40/52 (76%), Gaps = 4/52 (7%)

Query: 46 KESEEKD----ILETFRKVEVNIPLLDAIKQIPKYAKFLKELCTNKRKVDNV 93
          K++E K+     L+ FR++ +N+P +DA++Q+PKYAKFLK++ + KRK++ V
Sbjct: 13 KQAEAKEQFSKFLDIFRQLHINLPFIDALEQMPKYAKFLKDILSRKRKLEEV 64