Jatropha Genome Database

JcCA0006582.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0006582.10 + phase: 0 /partial
         (593 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29738.m000999 RNA binding protein, putative                           754   0.0  

>29738.m000999 RNA binding protein, putative
          Length = 1744

 Score =  754 bits (1948), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 395/624 (63%), Positives = 454/624 (72%), Gaps = 36/624 (5%)

Query: 1    VLGPFIEGLNDPVHHKRFC----------------LYQYTRHLNVRKGIDFLHSLALIAK 44
            +LG F+EGLNDPVHHK F                 L QYTR+LN RK I FLHSLA +AK
Sbjct: 439  ILGSFVEGLNDPVHHKDFGVKGVYTSRTIEAAARFLCQYTRYLNARKEIVFLHSLASVAK 498

Query: 45   HQSFGRAGLMGLAECIASAASGVGIQDDNEVEWSEDASPNAVQLKSSSNKIHHXXXXXXX 104
            HQSFGRAGLMGLAECIASAA GVG++D NE EW++DA  + V L SSS K+H        
Sbjct: 499  HQSFGRAGLMGLAECIASAACGVGLRDGNEAEWTKDALCDEVWLDSSSKKVH-INKTDLL 557

Query: 105  XXXRFVIESSKQHFNPNYRLRV--------------CEKVLEAVASVVSTFNVPLEVLLH 150
               R+VIESSKQHFNP YR RV              CEKVL A  SVVST +VPLEVLLH
Sbjct: 558  DVLRYVIESSKQHFNPKYRFRVLNTIIVIPFVIFAVCEKVLGAATSVVSTVDVPLEVLLH 617

Query: 151  FVSTLPREFTDYGGSLREKMQEWLFGGDKFYSSNNNSNQIKLLKSLQEFPERFTSSQVFV 210
            FVSTLPREFTDYGG LR KMQEWL G DK     + S++I+LLKSLQEFPERFTSSQ  V
Sbjct: 618  FVSTLPREFTDYGGPLRVKMQEWLLGVDK----KHFSSEIQLLKSLQEFPERFTSSQHVV 673

Query: 211  DTFVSFDDEDLDAWESEAKRWARMLFLVIKGEDQLGPIFTFIRKYGVNICEEFNRVGCSP 270
            D FVSFDDEDLDAW+SE KRWAR+LFLVIK E+ L PIF F+R  GV+IC++    G SP
Sbjct: 674  DAFVSFDDEDLDAWDSEVKRWARVLFLVIKEENHLVPIFKFLRNCGVDICKQCKHAGWSP 733

Query: 271  VKFFVITINLVAEIQLMQEKALDNGIRIRNKPKVSLFETVDQLDCAEASIINGKXXXXXX 330
            VKF V+T+NL+AEI+++ E+ ++ G +IR+  + SL  T+DQL   EAS IN K      
Sbjct: 734  VKFLVLTVNLIAEIRILWEREVERGFKIRSNSENSLLRTIDQLGSEEASAINEKFSDLFL 793

Query: 331  XXXXXXVNFACASCSIFLTSTARDTSLPSSVRGKLGGPSQRRLSSSTTTAVLEAITSIRA 390
                  V+FA  SCSIF TS  +DT LPSSVRGKLGGPSQRRLSSST TAVLEA+ S+ +
Sbjct: 794  SILEELVSFASTSCSIFWTSFVKDTDLPSSVRGKLGGPSQRRLSSSTATAVLEAVCSLPS 853

Query: 391  VASIMSWCAQFTSDVHLKFAWTFMWQFFWKTVSSPTCGSENGAEICLAAYEALVPVLRSI 450
            VAS+ SWC+ F +DV LKFAW+FMW+FF KT SS T  +E+GAE+CLAAYEAL PVLR++
Sbjct: 854  VASVTSWCSLFKNDVQLKFAWSFMWKFFLKTNSSLTYDTESGAEVCLAAYEALAPVLRAL 913

Query: 451  ASTFSPRAMDLIMENDKSSTSAEGSC-LDQLVLSFLQNINNLLAVGVLVRTRRAVLLNWK 509
              TFSP A+DLI ++DKSS+SAE    LDQLVLSFLQNINNLLAVGVLVR+RRAVLLNWK
Sbjct: 914  VFTFSPLALDLIRDSDKSSSSAEEKAWLDQLVLSFLQNINNLLAVGVLVRSRRAVLLNWK 973

Query: 510  WLCLESLLSIPQTAVENGIHLEDNRSFFSDAVIRYIFSDLVESLENSGESSVLPMLRSIR 569
            WLCLESLLSIP  A ENG HL DNR FFS+A IR IFSDLVESLEN+GE SVLPMLRSIR
Sbjct: 974  WLCLESLLSIPHYAFENGPHLVDNRLFFSEAAIRLIFSDLVESLENAGEGSVLPMLRSIR 1033

Query: 570  XXXXXXXXXXXXXXXXXCNDVDSQ 593
                             CN VD+Q
Sbjct: 1034 LTFGLLASGNSGSLVSSCNGVDAQ 1057