Jatropha Genome Database
- JcCA0004001.10
BLASTP 2.2.23 [Feb-03-2010]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= JcCA0004001.10 + phase: 2 /TE/pseudo/partial
(117 letters)
Database: castor_wgs_0.1_aa
31,221 sequences; 10,419,776 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
29869.m001168 conserved hypothetical protein 71 1e-13
48288.m000017 conserved hypothetical protein 63 4e-11
30162.m001269 nuclease, putative 58 8e-10
30174.m009074 nucleic acid binding protein, putative 51 1e-07
29868.m000350 hypothetical protein 50 2e-07
29736.m002093 conserved hypothetical protein 50 2e-07
30000.m000388 nuclease, putative 50 2e-07
29970.m001031 conserved hypothetical protein 49 3e-07
29641.m000379 nuclease, putative 49 6e-07
29939.m000527 nucleic acid binding protein, putative 49 7e-07
>29869.m001168 conserved hypothetical protein
Length = 149
Score = 70.9 bits (172), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%)
Query: 4 KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEM 63
KGN A GGV RD++G V GFM +GY + + AEL FHGL+ AW+ G R++++ M
Sbjct: 38 KGNPGSAAGGGVFRDYRGRCVVGFMCNIGYCSAIGAELWAAFHGLTIAWNKGLRKLVLAM 97
Query: 64 DSKMALDLVMKRDCSNRRFVNVL 86
DS +AL + KR N N++
Sbjct: 98 DSTLALYWLSKRSICNSHLSNLV 120
>48288.m000017 conserved hypothetical protein
Length = 120
Score = 62.8 bits (151), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 29/66 (43%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 10 ARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMAL 69
A GG+IRD G W+ GFM LG Y++M AELQ ++HGL AW G ++V++E +++
Sbjct: 12 ASLGGLIRDHNGDWIRGFMANLGVYSVMFAELQGIYHGLCLAWSKGIKKVVLEA-YNLSI 70
Query: 70 DLVMKR 75
+V+ R
Sbjct: 71 KMVLNR 76
>30162.m001269 nuclease, putative
Length = 145
Score = 58.2 bits (139), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 8 TPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKM 67
AR GG+IRD G WV GF++ +G + AEL G+S AW G ++VE+DS +
Sbjct: 17 AKARGGGIIRDSNGCWVGGFVIHIGACDPVGAELWAFLQGISLAWSKGIHNLIVEVDSSL 76
Query: 68 ALDLVMKRDCSNRRFVNVLS----LIREFW 93
D + K+ N++S L++ +W
Sbjct: 77 VADWMNKKSVCKSIHANLVSACLDLLQNWW 106
>30174.m009074 nucleic acid binding protein, putative
Length = 244
Score = 50.8 bits (120), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 5/95 (5%)
Query: 4 KGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMV-AELQVLFHGLSTAWDVGCREVLVE 62
+G PA GG+IRD +G W+ GF +G + V AEL L GL A +GC +++VE
Sbjct: 94 RGEDGPAAAGGLIRDSRGRWIRGFKCYMGLGSTSVKAELLGLIEGLKLARKIGCEKLIVE 153
Query: 63 MDSKMALDLV-MKRDCSNRRFV---NVLSLIREFW 93
D++ + ++ +K + N ++ + L+++ W
Sbjct: 154 TDNEGVVQMIKIKTNRQNDNYILASEIQQLLQKGW 188
>29868.m000350 hypothetical protein
Length = 122
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 33/50 (66%)
Query: 2 SLKGNLTPARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTA 51
+L+ +L A CGG+IRD G WV FM LG ++MVA++ ++HGL A
Sbjct: 73 ALRSSLDRAACGGLIRDHNGDWVGSFMANLGVCSVMVAKVMGMYHGLRLA 122
>29736.m002093 conserved hypothetical protein
Length = 279
Score = 50.4 bits (119), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 10 ARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMAL 69
A GGVIRD + GW+ GF +G + + A+L GL A G R++++EMDS +AL
Sbjct: 182 ASAGGVIRDCRAGWLSGFGYNIGKCSPLDAKLWEALAGLDMASRQGYRKIILEMDSSLAL 241
Query: 70 DLVMKR 75
+ + +
Sbjct: 242 EYISSK 247
>30000.m000388 nuclease, putative
Length = 219
Score = 50.1 bits (118), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 10 ARCGGVIRDFKGGWVCGFMVRL-GYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMA 68
A G+ R+ G W GF ++L Y+ VAEL + +GL+ AW+ G R +++E D+K +
Sbjct: 69 ATAAGLFRNCNGQWCGGFAIKLRDCYSAFVAELFGILNGLNIAWNAGFRNIILETDNKTS 128
Query: 69 LDLVMKRDCSNRRFVNVLSLI 89
+D + D +R ++ L+
Sbjct: 129 VDKIYG-DSDTKRMGDLEDLL 148
>29970.m001031 conserved hypothetical protein
Length = 132
Score = 49.3 bits (116), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 43/71 (60%)
Query: 21 GGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMALDLVMKRDCSNR 80
G W+ GF+V +G ++ A L L+HGL+ AW +G R++LV++DS A+ LV +
Sbjct: 4 GMWIHGFVVNIGRCSITGAGLWGLYHGLTLAWKLGIRKLLVKVDSMCAVPLVTGEKDISS 63
Query: 81 RFVNVLSLIRE 91
+ ++S IR
Sbjct: 64 SYAPLVSGIRS 74
>29641.m000379 nuclease, putative
Length = 177
Score = 48.9 bits (115), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 1/64 (1%)
Query: 10 ARCGGVIRDFKGGWVCGFMVRL-GYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMA 68
A G+ R+ G W F ++L Y+ VAEL + +GL AWD G + +++E D+K++
Sbjct: 27 ATAAGLFRNSDGQWCGAFAIKLTDCYSAFVAELCSILNGLKIAWDAGFKNIILETDNKIS 86
Query: 69 LDLV 72
+D +
Sbjct: 87 VDTI 90
>29939.m000527 nucleic acid binding protein, putative
Length = 209
Score = 48.5 bits (114), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 10 ARCGGVIRDFKGGWVCGFMVRLGYYTLMVAELQVLFHGLSTAWDVGCREVLVEMDSKMAL 69
A GVI D G W+ GF +++ + + EL L+ GL AW +G R + VE+D+K +
Sbjct: 65 ATSRGVIHDDIGNWLRGFFMKMSFCIVTATELWGLYQGLELAWKIGIRRIQVEVDNKRVV 124
Query: 70 DLV 72
L+
Sbjct: 125 KLI 127