Jatropha Genome Database

JcCA0003732.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.20 + phase: 0 
         (273 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30190.m011168 Transcription initiation factor IIE subunit beta, ...   372   e-103

>30190.m011168 Transcription initiation factor IIE subunit beta,
           putative
          Length = 282

 Score =  372 bits (954), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 195/284 (68%), Positives = 218/284 (76%), Gaps = 13/284 (4%)

Query: 1   MALHEKLDRFKKQQEKCQSTLADIA---GPSKSTGAQKSIPAASTVTNTRTPGPPVKFSN 57
           M L E+L++FK+QQEKCQ+TL  IA   G  K +   K +  +  +   RTPGP VKFSN
Sbjct: 1   MDLQEQLNKFKRQQEKCQTTLTSIAAKAGSHKPSITPKIVAPSPIIP--RTPGPAVKFSN 58

Query: 58  DTERLQHINSIRKAPVGAQMKH--------KTAFTPEQINDACFVDVKSNKTVFDSLRNN 109
           DTERLQHI+SIRKAPVGAQ+K         + AFTPEQIN+AC+VDV SNK VFDSLRNN
Sbjct: 59  DTERLQHIHSIRKAPVGAQIKRVIDLLFETRQAFTPEQINEACYVDVNSNKAVFDSLRNN 118

Query: 110 PKVNYDGRCFSYKSKHDLKDKNQLLSLICKFPEGIATIDLKDAYPAVTEDLQALKAAGKI 169
           PKV+YDGR FSYKSKHDLKDK QLL LI +F EGIA IDLKDAYP V EDLQALKAAG I
Sbjct: 119 PKVHYDGRHFSYKSKHDLKDKKQLLYLIREFKEGIAVIDLKDAYPTVMEDLQALKAAGGI 178

Query: 170 WLLSNYDSQEDIAYPNDPRANIKVDDELKQLFRGVELAHDMLDIERDLIKNGMKPATDTA 229
           WLLSN+DSQEDIAYPNDP+A IKVDDELK  FR +EL  DMLDIE+DL KNGMKPAT+TA
Sbjct: 179 WLLSNFDSQEDIAYPNDPKAVIKVDDELKVKFREIELPRDMLDIEKDLQKNGMKPATNTA 238

Query: 230 KRRAAAQVQGIXXXXXXXXXXXXXXXRTKLTNAHLPELFRNLGS 273
           KRRAAAQVQGI               +TKLTNAHLPELF+NL S
Sbjct: 239 KRRAAAQVQGISTKPKTKKKTKEISKKTKLTNAHLPELFQNLKS 282