Jatropha Genome Database

JcCA0003732.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003732.10 + phase: 1 /pseudo/partial
         (434 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29976.m000497 transcription factor, putative                          216   1e-56
29915.m000469 transcription factor, putative                          133   1e-31
29917.m001969 transcription factor, putative                           96   2e-20

>29976.m000497 transcription factor, putative
          Length = 861

 Score =  216 bits (551), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 109/141 (77%), Positives = 117/141 (82%), Gaps = 11/141 (7%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVT----------- 49
           TFSRIDPGGKLV+GFRKATNNSLDTQDAQTS +PN AA  E SFSG VT           
Sbjct: 410 TFSRIDPGGKLVVGFRKATNNSLDTQDAQTSALPNGAASAETSFSGTVTVSADGDTGGNK 469

Query: 50  SENHGGRVNGDALLQPTSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSV 109
           SEN+GGR+NGDA+ Q T+EKKRTRNIGPK+KRLLM+SEDALELRLTWEEAQDLLRPPPSV
Sbjct: 470 SENYGGRINGDAVQQSTAEKKRTRNIGPKSKRLLMHSEDALELRLTWEEAQDLLRPPPSV 529

Query: 110 KPSIVAIEDHEFEEYDXATSF 130
           KPSIV IEDHEFEEYD    F
Sbjct: 530 KPSIVTIEDHEFEEYDEPPVF 550



 Score =  164 bits (415), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 83/135 (61%), Positives = 107/135 (79%), Gaps = 9/135 (6%)

Query: 308 SQKVDNNDCKDDSEMSP--------TDKLDNERNPNRKQTEVAETSAGQIDLNCHPNGED 359
           SQK D+ND KD+  M           +  +NE N NRKQTE+ ETS+GQIDLN HPN ED
Sbjct: 728 SQK-DDNDRKDEFAMIGRLSHAVLNLNNSENEGNYNRKQTEIPETSSGQIDLNSHPNRED 786

Query: 360 IQMDIPGLSIMDLADAANMPFDNYIKENGLSSLMCDRQASLGSCSHSQSDGENLRRLSDE 419
           +Q+DI GLS+M+LA+AAN+PFDNY+K+NGL+  +C+RQAS+GSC HSQ++GE+L RLSDE
Sbjct: 787 MQLDIQGLSMMNLANAANLPFDNYVKQNGLADFLCERQASMGSCLHSQNNGESLIRLSDE 846

Query: 420 AFLASIGWDRESRGD 434
           AFLAS+GW+ ES+GD
Sbjct: 847 AFLASVGWNHESKGD 861


>29915.m000469 transcription factor, putative
          Length = 891

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 96/137 (70%), Gaps = 8/137 (5%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEA--SFSGIVT---SENHGG 55
           TFSR+DP GKLVMGFRKA+N S+  Q  + ST  + +A+++   S +G ++   SE H  
Sbjct: 419 TFSRMDPEGKLVMGFRKASN-SMAVQSLKGSTDTHLSALSKHLHSANGDISWHKSEKHEE 477

Query: 56  RVNGDALLQP--TSEKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSI 113
           R     LL      E+KR RNIG K+KRLL++S DALEL+LTWEEAQD LRPPP+VKPSI
Sbjct: 478 RTRESLLLTSLLVPERKRARNIGSKSKRLLIDSLDALELKLTWEEAQDFLRPPPTVKPSI 537

Query: 114 VAIEDHEFEEYDXATSF 130
           V IEDH+FEEY+    F
Sbjct: 538 VTIEDHDFEEYEEPPVF 554



 Score = 62.8 bits (151), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 69/117 (58%), Gaps = 2/117 (1%)

Query: 319 DSEMSPTDKLDNERNPNRKQTEVAETSAGQIDLNCHPNGED-IQMDIPGLSIMDLADAAN 377
           ++E    ++L+++   N    ++ +   G IDLNC P+ E+  Q  +  +S+M L   A+
Sbjct: 761 ENEARSMNELESKSQSNNLSNKMVDAGKGHIDLNCQPDREEESQAGVARMSMMSLLQVAS 820

Query: 378 MPFDNYIKENGLSSLMCDRQASLGSCSHSQSDGENLRRLSDEAFLASIGWDRESRGD 434
           +P + Y+K+NGL+SL+ ++Q S  S    Q+ GE+  RL ++  +AS   ++ES G+
Sbjct: 821 LPLETYLKQNGLTSLVSEQQGSSASHVPPQA-GESEGRLPEDCQIASAVQEQESGGE 876


>29917.m001969 transcription factor, putative
          Length = 854

 Score = 96.3 bits (238), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 79/127 (62%), Gaps = 16/127 (12%)

Query: 1   TFSRIDPGGKLVMGFRKATNNSLDTQDAQTSTIPNSAAITEASFSGIVTSENHGGRVNGD 60
           TFSR++P GKLVMGFRK +N       +  + + +S+  ++   SG +  E         
Sbjct: 408 TFSRLEPEGKLVMGFRKTSN----VPSSDQAELADSSPWSKVDKSGYIAKE--------- 454

Query: 61  ALLQPTS--EKKRTRNIGPKNKRLLMNSEDALELRLTWEEAQDLLRPPPSVKPSIVAIED 118
            +L+  S   K+++  +G K+KRL + +ED +EL+LTWEEAQ LLRPPP   PS++ IE 
Sbjct: 455 -VLEAKSSIRKRKSSTLGSKSKRLRIENEDMIELKLTWEEAQGLLRPPPDHIPSVLVIEG 513

Query: 119 HEFEEYD 125
           +EFEEY+
Sbjct: 514 YEFEEYE 520