Jatropha Genome Database

JcCA0003701.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003701.10 - phase: 2 /TE/partial
         (227 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30065.m001158 conserved hypothetical protein                          104   3e-23

>30065.m001158 conserved hypothetical protein
          Length = 101

 Score =  104 bits (260), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 46/92 (50%), Positives = 69/92 (75%)

Query: 30  EKLELLERSITALKTHKEVVDMDSLSLFLEARLPTKFKMPNMDKFDGTTCPTTHLKMYVG 89
           E++E LE+++  L+ H++ +D DSL LF  AR+P KFKM ++D+FD T+    HL +YVG
Sbjct: 2   ERIEALEKTLKTLRKHEDFIDADSLILFPNARIPPKFKMLDLDRFDSTSFLKGHLNIYVG 61

Query: 90  GLNPFGLNSELLAQLFQQSLTGAALRWFVSLD 121
            + P G+N+ELLAQLFQ++L  A L+WF+SL+
Sbjct: 62  AMKPLGINNELLAQLFQRTLKRAILKWFLSLE 93