Jatropha Genome Database

JcCA0003592.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.20 + phase: 0 /TE/pseudo/partial
         (435 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30065.m001158 conserved hypothetical protein                          111   8e-25

>30065.m001158 conserved hypothetical protein
          Length = 101

 Score =  111 bits (277), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 48/92 (52%), Positives = 71/92 (77%)

Query: 114 EKLELLERSITALKTHKEVVDMDSLSLFPEARLPTKFKMPNMDKFDGTTCPKTHLKMYVG 173
           E++E LE+++  L+ H++ +D DSL LFP AR+P KFKM ++D+FD T+  K HL +YVG
Sbjct: 2   ERIEALEKTLKTLRKHEDFIDADSLILFPNARIPPKFKMLDLDRFDSTSFLKGHLNIYVG 61

Query: 174 ALNPFGLNSELFAQLFQQSLTGAALRWFVSLD 205
           A+ P G+N+EL AQLFQ++L  A L+WF+SL+
Sbjct: 62  AMKPLGINNELLAQLFQRTLKRAILKWFLSLE 93