Jatropha Genome Database

JcCA0003592.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003592.10 + phase: 1 /partial
         (98 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

29827.m002559 glycine cleavage system h protein, putative             131   7e-32
28359.m000275 glycine cleavage system h protein, putative              99   6e-22
33804.m000026 glycine cleavage system h protein, putative              72   5e-14

>29827.m002559 glycine cleavage system h protein, putative
          Length = 165

 Score =  131 bits (329), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 63/74 (85%), Positives = 69/74 (93%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSDVNSPISGE+VEVN+KL+E PG+INSSPYEEGWMIKVKP+NPSEL SL+  
Sbjct: 92  AVESVKATSDVNSPISGEVVEVNTKLTEGPGSINSSPYEEGWMIKVKPNNPSELESLMGP 151

Query: 85  KAYTKFCEEEDAAH 98
           K YTKFCEEEDAAH
Sbjct: 152 KEYTKFCEEEDAAH 165


>28359.m000275 glycine cleavage system h protein, putative
          Length = 142

 Score = 98.6 bits (244), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 46/72 (63%), Positives = 60/72 (83%)

Query: 25  AVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGSLLDA 84
           AVESVKATSD+NSP+SG++VEVN +L+ +PG +NSSPY++GW+IKV  S+  EL +L D+
Sbjct: 70  AVESVKATSDINSPVSGKVVEVNEELNGSPGLVNSSPYDKGWIIKVNISDVGELKNLKDS 129

Query: 85  KAYTKFCEEEDA 96
             Y KFCEEEDA
Sbjct: 130 DEYLKFCEEEDA 141


>33804.m000026 glycine cleavage system h protein, putative
          Length = 121

 Score = 72.0 bits (175), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 48/71 (67%)

Query: 21  EELWAVESVKATSDVNSPISGEIVEVNSKLSEAPGAINSSPYEEGWMIKVKPSNPSELGS 80
           E L  VESVKA SDV +P+SGE+VE N++L +AP  +N+ P   GW  K+K SNP+E+ +
Sbjct: 48  EGLAVVESVKAASDVYAPVSGEVVEANAELGDAPETVNAVPEAGGWFAKLKLSNPAEVDA 107

Query: 81  LLDAKAYTKFC 91
           L+   AY  F 
Sbjct: 108 LMVRDAYEAFL 118