Jatropha Genome Database

JcCA0003212.20
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.20 - phase: 0 
         (151 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008862 40S ribosomal protein S13, putative                     296   2e-81
30147.m014187 40S ribosomal protein S13, putative                     198   9e-52
30190.m011019 40S ribosomal protein S13, putative                     159   5e-40
29813.m001467 conserved hypothetical protein                           82   1e-16

>30174.m008862 40S ribosomal protein S13, putative
          Length = 151

 Score =  296 bits (759), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 145/151 (96%), Positives = 150/151 (99%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QDV++NICKFAKKGL PSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVDENICKFAKKGLRPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120
           AQV+SVTG+KILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES
Sbjct: 61  AQVKSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDKDSKFRLILVES 120

Query: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151
           RIHRLARYYKKTKKLPPVWKYESTTASTLVA
Sbjct: 121 RIHRLARYYKKTKKLPPVWKYESTTASTLVA 151


>30147.m014187 40S ribosomal protein S13, putative
          Length = 112

 Score =  198 bits (503), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 97/109 (88%), Positives = 104/109 (95%), Gaps = 1/109 (0%)

Query: 1   MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
           MGRMHSRGKGISASALPYKRTPPSWLKIS+QDVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1   MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61  AQVRSVTGNKILRILKAHGLAPEIPEDLYHLIKKAVAIRKHLERNRKDK 109
           AQVRSVTG+KILRILKAHGLAPEIPEDLYHLIKKAVA+    E +RK++
Sbjct: 61  AQVRSVTGSKILRILKAHGLAPEIPEDLYHLIKKAVALEAFGE-DRKER 108


>30190.m011019 40S ribosomal protein S13, putative
          Length = 82

 Score =  159 bits (402), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 75/80 (93%), Positives = 80/80 (100%)

Query: 1  MGRMHSRGKGISASALPYKRTPPSWLKISAQDVEDNICKFAKKGLTPSQIGVILRDSHGI 60
          MGRMHSRGKGISASALPYKRTPPSWLKIS+QDVE+NICKFAKKGLTPSQIGVILRDSHGI
Sbjct: 1  MGRMHSRGKGISASALPYKRTPPSWLKISSQDVEENICKFAKKGLTPSQIGVILRDSHGI 60

Query: 61 AQVRSVTGNKILRILKAHGL 80
          AQV+SVTG+KILRILKAHG+
Sbjct: 61 AQVKSVTGSKILRILKAHGI 80


>29813.m001467 conserved hypothetical protein
          Length = 102

 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 39/46 (84%), Positives = 43/46 (93%)

Query: 34 EDNICKFAKKGLTPSQIGVILRDSHGIAQVRSVTGNKILRILKAHG 79
          ++NICK AKKGLTPS IGVILRDSHGIAQV+SVT +KILRILKAHG
Sbjct: 49 DENICKSAKKGLTPSTIGVILRDSHGIAQVKSVTCSKILRILKAHG 94