Jatropha Genome Database

JcCA0003212.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0003212.10 - phase: 0 
         (619 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30174.m008861 conserved hypothetical protein                          892   0.0  
29813.m001461 conserved hypothetical protein                          520   e-147
30174.m008872 conserved hypothetical protein                          514   e-146
29813.m001462 hypothetical protein                                    213   2e-55
29813.m001460 tRNA 2'-phosphotransferase, putative                    183   2e-46
29813.m001466 conserved hypothetical protein                          144   1e-34
30174.m008867 conserved hypothetical protein                          109   4e-24

>30174.m008861 conserved hypothetical protein
          Length = 554

 Score =  892 bits (2304), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/534 (81%), Positives = 478/534 (89%), Gaps = 12/534 (2%)

Query: 85  KDKIDALGRLLTRVLRHMASELSLNMRSDGYVKVQDLLKLNMKTFADIPLRAHTVDDIKE 144
           KDKIDALGRLLTR+LRHMASEL+LNMRSDG+V+VQDLLKLNMKTFA IP+R+HTVDDIKE
Sbjct: 26  KDKIDALGRLLTRILRHMASELNLNMRSDGFVRVQDLLKLNMKTFASIPIRSHTVDDIKE 85

Query: 145 AVRKDNKQRFSLLEENGELLIRANQGHTIKAVESESLLKPILSADEVPVCVHGTYKKNVE 204
           AVR+DNKQRFSLLEENGELLIRANQGHTIK VESESLLKPI+ ADEVPVCVHGTYKKN+E
Sbjct: 86  AVRRDNKQRFSLLEENGELLIRANQGHTIKTVESESLLKPIILADEVPVCVHGTYKKNLE 145

Query: 205 SILNSGLKRMQRLHVHFSCGLPTDGEVISGMRRDVNVLVYLNVKKALEEGMKLYISDNRV 264
           SIL SGLKRMQRLH+HFSCGLPTDGEVISGMRR+VNVL+YL+V+KALE+GMKLYISDNRV
Sbjct: 146 SILESGLKRMQRLHIHFSCGLPTDGEVISGMRRNVNVLIYLDVRKALEDGMKLYISDNRV 205

Query: 265 ILTEGFDGVVPVKYFEKIESWPERRPIPFQTGTIYIGL-RLFFWLVLELRNNSAIQGSQK 323
           ILTEGFDGVVPV Y          RP+ F    +Y+    +    VLEL  NS  +  QK
Sbjct: 206 ILTEGFDGVVPVNY---------ERPLLF--CVMYLACYTMHVASVLELHWNSVTEAPQK 254

Query: 324 KRNNKSDHLVLGPAAGQGLPNRLQCQGSRALNKTHLLNPSSASNVGESVAFVTVFTIYNT 383
             N KSDHLV+GPAAGQGLP+RLQC+GS+ALNKTHLL+ SS SNVG++VAFVTVFTIYNT
Sbjct: 255 NWNKKSDHLVIGPAAGQGLPDRLQCEGSKALNKTHLLDSSSGSNVGDNVAFVTVFTIYNT 314

Query: 384 SLDSHADSRSSNLVTVGNVSYSKTQRSMAILNIFINFIQTFLNTRLNGLAQHPQHKNHYI 443
           SLDS  D RSSNLVTVGNVSYSKT+RSMAILN+FINFIQ FL+T+L  LA++P HK+HYI
Sbjct: 315 SLDSLPDDRSSNLVTVGNVSYSKTERSMAILNVFINFIQNFLDTKLKELAKNPVHKSHYI 374

Query: 444 FTDSDIAVVDDLKHIFHKFPNFHLALTFRNNKDQPLNSGFIAVRGTPESILRAKIFLEEV 503
           FTDSDIAVVDDL  IFH++PNFH+ALTFRNNK+QPLNSGFIAVRGT ESILRAKIFL+ V
Sbjct: 375 FTDSDIAVVDDLGRIFHEYPNFHIALTFRNNKEQPLNSGFIAVRGTAESILRAKIFLQHV 434

Query: 504 LEVYTSKYMNASRMLGDQLALAWIIKSHPSFDLRRFRKAQAFVEEVGGASVLFLPCATYN 563
           LEVYTSKYMNASRMLGDQLALAW+I+SHP FDL+RFRKAQAF++E+GGASVLFLPCATYN
Sbjct: 435 LEVYTSKYMNASRMLGDQLALAWVIRSHPGFDLQRFRKAQAFMDEMGGASVLFLPCATYN 494

Query: 564 WTPPEGAGQFRGMPLDVKVVHFKGSRKRLMLESWNFFSSTSDISDMLCLILTSG 617
           WTPPEGAGQF GMPLDVKVVHFKGSRK LMLESWNFF S SDISDMLCLIL SG
Sbjct: 495 WTPPEGAGQFHGMPLDVKVVHFKGSRKHLMLESWNFFRSASDISDMLCLILMSG 548


>29813.m001461 conserved hypothetical protein
          Length = 388

 Score =  520 bits (1338), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 257/357 (71%), Positives = 282/357 (78%), Gaps = 48/357 (13%)

Query: 309 VLELRNNSAIQGSQKKRNNKSDHLVLGPAAGQGLPNRLQCQGSRALNKTHLLNPSSASNV 368
           VLEL +NS  +  QK RN KSDHLVLGPAAGQGLP+RLQC+GS+ALNKTHLL+ SS SNV
Sbjct: 26  VLELHSNSVTEAPQKNRNKKSDHLVLGPAAGQGLPDRLQCEGSKALNKTHLLDSSSGSNV 85

Query: 369 GESVAFVTVFTIYNTSLDSHADSRSSNLVTVGNVSYSKTQRSMAILNIFINFIQT----- 423
           G++VAFVTVFTIYNTSLDS  D RSSNLVTVGNVSYSK +RSMAILN+FINFIQ      
Sbjct: 86  GDNVAFVTVFTIYNTSLDSIPDDRSSNLVTVGNVSYSKMERSMAILNVFINFIQVTMPRS 145

Query: 424 -------------------------------------------FLNTRLNGLAQHPQHKN 440
                                                      FL+ +L  LA++P HK+
Sbjct: 146 NVIILTDPASDLSLQRYKVTLYPIQGEYSREKLMLQRIKSYINFLDMKLKELAKNPVHKS 205

Query: 441 HYIFTDSDIAVVDDLKHIFHKFPNFHLALTFRNNKDQPLNSGFIAVRGTPESILRAKIFL 500
           HYIFTDSDIAVVDDL  IFH++PNFH+ALTFRNNK+QPLNSGFIAVRGT ESILRAKIFL
Sbjct: 206 HYIFTDSDIAVVDDLGRIFHEYPNFHIALTFRNNKEQPLNSGFIAVRGTAESILRAKIFL 265

Query: 501 EEVLEVYTSKYMNASRMLGDQLALAWIIKSHPSFDLRRFRKAQAFVEEVGGASVLFLPCA 560
           + VLEVYTSKYMNASRMLGDQLALAW+I+SHP FDLRRFRKAQAF++E+GGASVLFLPCA
Sbjct: 266 QHVLEVYTSKYMNASRMLGDQLALAWVIRSHPGFDLRRFRKAQAFMDEMGGASVLFLPCA 325

Query: 561 TYNWTPPEGAGQFRGMPLDVKVVHFKGSRKRLMLESWNFFSSTSDISDMLCLILTSG 617
           TYNWTPPEGAGQF GMPLDVKVVHFKGSRKRLMLESWNFF S SDISDMLCLIL SG
Sbjct: 326 TYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFRSASDISDMLCLILMSG 382


>30174.m008872 conserved hypothetical protein
          Length = 388

 Score =  514 bits (1323), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/357 (71%), Positives = 282/357 (78%), Gaps = 48/357 (13%)

Query: 309 VLELRNNSAIQGSQKKRNNKSDHLVLGPAAGQGLPNRLQCQGSRALNKTHLLNPSSASNV 368
           VLEL +NS  +  QK RN KSDHLVLGPAAGQGLP+RLQC+GS+ALNKTHLL+ SS SNV
Sbjct: 26  VLELHSNSVTEAPQKNRNKKSDHLVLGPAAGQGLPDRLQCEGSKALNKTHLLDSSSGSNV 85

Query: 369 GESVAFVTVFTIYNTSLDSHADSRSSNLVTVGNVSYSKTQRSMAILNIFINFIQT----- 423
           G++VAFVTVFTIYNTSLDS  + RSSNLVTVGNVSYSKT+RSMAILN+FINFIQ      
Sbjct: 86  GDNVAFVTVFTIYNTSLDSLPNDRSSNLVTVGNVSYSKTERSMAILNVFINFIQVTMPQS 145

Query: 424 -------------------------------------------FLNTRLNGLAQHPQHKN 440
                                                      FL+T+L  LA++P HK+
Sbjct: 146 NVIILTDPASDLLLQRDKVTLYPIQGEYSREKLMLQRIRSYINFLDTKLKELAKNPVHKS 205

Query: 441 HYIFTDSDIAVVDDLKHIFHKFPNFHLALTFRNNKDQPLNSGFIAVRGTPESILRAKIFL 500
           HYIFTDSDIAVVDDL  IFH++ NFH+ALTFRNNK+QPLNSGFIAVRGT ESILRAKIFL
Sbjct: 206 HYIFTDSDIAVVDDLGRIFHEYRNFHIALTFRNNKEQPLNSGFIAVRGTAESILRAKIFL 265

Query: 501 EEVLEVYTSKYMNASRMLGDQLALAWIIKSHPSFDLRRFRKAQAFVEEVGGASVLFLPCA 560
           + VLEVYTSKYMNAS+MLGDQLALAW+I+SHP FDL RFRKAQAF++E+GGASVLFLPCA
Sbjct: 266 QHVLEVYTSKYMNASQMLGDQLALAWVIRSHPGFDLWRFRKAQAFMDEMGGASVLFLPCA 325

Query: 561 TYNWTPPEGAGQFRGMPLDVKVVHFKGSRKRLMLESWNFFSSTSDISDMLCLILTSG 617
           TYNWTPPEGAGQF GMPLDVKVVHFKGSRKRLMLESWNFF S SDISDMLCLIL SG
Sbjct: 326 TYNWTPPEGAGQFHGMPLDVKVVHFKGSRKRLMLESWNFFRSASDISDMLCLILMSG 382


>29813.m001462 hypothetical protein
          Length = 202

 Score =  213 bits (543), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 103/130 (79%), Positives = 109/130 (83%), Gaps = 8/130 (6%)

Query: 488 GTPESILRAKIFLEEVLEVYTSKYMNASRMLGDQLALAWIIKSHPSFDLRRFRKAQAFVE 547
           G P    RAKIFL+ VLEVYTSKYMNASR      ALAW+I+SHP FDLRRF KAQAF++
Sbjct: 75  GLPSC--RAKIFLQHVLEVYTSKYMNASR------ALAWVIRSHPGFDLRRFHKAQAFMD 126

Query: 548 EVGGASVLFLPCATYNWTPPEGAGQFRGMPLDVKVVHFKGSRKRLMLESWNFFSSTSDIS 607
           E+GGAS LFLPCA YNWTPPEGAGQF  MPLDVKVVHFKGSRKRLMLESWNFF S SDIS
Sbjct: 127 EMGGASALFLPCAIYNWTPPEGAGQFHRMPLDVKVVHFKGSRKRLMLESWNFFRSASDIS 186

Query: 608 DMLCLILTSG 617
           DMLCLIL SG
Sbjct: 187 DMLCLILMSG 196


>29813.m001460 tRNA 2'-phosphotransferase, putative
          Length = 106

 Score =  183 bits (464), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 84/103 (81%), Positives = 93/103 (90%)

Query: 193 VCVHGTYKKNVESILNSGLKRMQRLHVHFSCGLPTDGEVISGMRRDVNVLVYLNVKKALE 252
           +CVHGTYKKN+  IL  GLKRMQRLHVHFSCGLPTDGEVIS MRR+VNVL+YL++KKALE
Sbjct: 4   MCVHGTYKKNLGFILEYGLKRMQRLHVHFSCGLPTDGEVISDMRRNVNVLIYLDMKKALE 63

Query: 253 EGMKLYISDNRVILTEGFDGVVPVKYFEKIESWPERRPIPFQT 295
           +GMKLYISDNRVILTE FDGVVPVKYFEKIESWP+R  + F T
Sbjct: 64  DGMKLYISDNRVILTESFDGVVPVKYFEKIESWPDRLLMSFPT 106


>29813.m001466 conserved hypothetical protein
          Length = 205

 Score =  144 bits (364), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 76/124 (61%), Positives = 89/124 (71%), Gaps = 2/124 (1%)

Query: 282 IESWPERRPIPFQTGTIYIGLRLFFWLVLELRNNSAIQGSQKKRNNKSDHLVLGPAAGQG 341
           + +W  RR        + +   +F   VLEL +NS  +  QK RN KS HLVLGPAA QG
Sbjct: 1   MRTWSGRRRFILCFFLLLVIFHIF--SVLELYSNSVTEALQKNRNKKSYHLVLGPAASQG 58

Query: 342 LPNRLQCQGSRALNKTHLLNPSSASNVGESVAFVTVFTIYNTSLDSHADSRSSNLVTVGN 401
           LPNRLQC+GS+ALNKTHLL+ SS SNV ++VAFVTVFTIYNTSLDS  D RSSNLV VGN
Sbjct: 59  LPNRLQCEGSKALNKTHLLDSSSDSNVRDNVAFVTVFTIYNTSLDSFPDDRSSNLVIVGN 118

Query: 402 VSYS 405
           V Y+
Sbjct: 119 VFYT 122



 Score = 73.6 bits (179), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 39/40 (97%)

Query: 235 MRRDVNVLVYLNVKKALEEGMKLYISDNRVILTEGFDGVV 274
           +RR VNVL+YL+VKKALE+GMKLY+SDNRVILTEGFDG++
Sbjct: 164 IRRSVNVLIYLDVKKALEDGMKLYVSDNRVILTEGFDGIL 203


>30174.m008867 conserved hypothetical protein
          Length = 81

 Score =  109 bits (272), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 50/69 (72%), Positives = 60/69 (86%)

Query: 227 TDGEVISGMRRDVNVLVYLNVKKALEEGMKLYISDNRVILTEGFDGVVPVKYFEKIESWP 286
           ++  +   MRR+VNVL+YL+VKKALE+GMKLYISDNRVILTEGFDGVV VKYFE+I+SWP
Sbjct: 13  SNQSIYYSMRRNVNVLIYLDVKKALEDGMKLYISDNRVILTEGFDGVVLVKYFERIDSWP 72

Query: 287 ERRPIPFQT 295
           +R PI F T
Sbjct: 73  DRLPISFLT 81