Jatropha Genome Database

JcCA0002951.10
Show Alignment:  
BLASTP 2.2.23 [Feb-03-2010]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= JcCA0002951.10 + phase: 0 
         (249 letters)

Database: castor_wgs_0.1_aa 
           31,221 sequences; 10,419,776 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

30146.m003455 RNA polymerase II mediator complex subunit, putative    410   e-115

>30146.m003455 RNA polymerase II mediator complex subunit, putative
          Length = 251

 Score =  410 bits (1055), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 199/251 (79%), Positives = 213/251 (84%), Gaps = 2/251 (0%)

Query: 1   MATPPPGASFEGNXXXXXXXX--GTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDW 58
           MAT PPGA+F+GN          GTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDW
Sbjct: 1   MATVPPGANFDGNPLAPAPPQPPGTDMTGICFRDQLWLNTYPLDRNLIFDYFALSPFYDW 60

Query: 59  TCNNEQLRLQSIHPLDLSHLSKMTGMEYMLSEVMEPNLFVIRKQKRDSPEKVTPMLTYYI 118
           TCNNEQLRLQSIHPLDLSHLSKMTG EYML+EV+EPNLFVIRKQKRDSPEKVTPMLTYY+
Sbjct: 61  TCNNEQLRLQSIHPLDLSHLSKMTGTEYMLNEVIEPNLFVIRKQKRDSPEKVTPMLTYYV 120

Query: 119 LDGSIYQAPQLCNVFAARIGRALYYISKAFTNAASKLEKIGYVDEGEGVTSESKVGKELI 178
           LDGSIYQAPQLCNVFAARIGRALY+ISKAFT AASKLEKIGYVDEGEGV SESKVGKE+I
Sbjct: 121 LDGSIYQAPQLCNVFAARIGRALYHISKAFTTAASKLEKIGYVDEGEGVASESKVGKEVI 180

Query: 179 DFKEVKRIDSILASLQRKLXXXXXXXXXXXXXXXXXSTDTEKGAESQQGTESQPLAVDPI 238
           DFKEVKRID ILAS+QRKL                 + + EKG+E++Q  E+QP  VDPI
Sbjct: 181 DFKEVKRIDHILASIQRKLPPAPPPPPFPEGYVPPATVEAEKGSETRQAVETQPPPVDPI 240

Query: 239 IDQGPAKRMKF 249
           IDQGPAKRMKF
Sbjct: 241 IDQGPAKRMKF 251